Gene Daci_3531 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3531 
Symbol 
ID5749116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3878976 
End bp3881198 
Gene Length2223 bp 
Protein Length740 aa 
Translation table11 
GC content69% 
IMG OID641298634 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001564552 
Protein GI160898970 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.313722 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00643483 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATGAGCA TTCGCATTCA AAACCCCGCC CCGCGACACC TCCAAGGCGC GCGGACCCCG 
CTATCCCTGC TGATCTGCGC CCTGTGTGCC GCCCCTGCGC CAGCAGTCTG GGCCGCCGAC
GAGGACAGGC CCCCTGCCAG GAACAGCGAC ACCGAACTGG GCACCGTCAC CGTGCGCGCC
GCCGCCGATG CGGGCACCAC CGAAGGCACG GCGCGCTACA CCAGCGGTTC CACGGGAACG
GCCACGGGCC TGCAACTGTC GGCACGCGAG ACACCGCAGT CGGTCAGCGT GATCACGCGC
CAGCTCATGG ACGATGCCGG CCAGCTCACG GTCTCGCAGA CGCTGGAGGC CTCCGCCCCC
GGCCTGTCGG TCAGCCGCAG CGACAGCAAC CGCTATCAGT TTTCCTCGCG CGGCTTTGGC
GTCAGCAACT TCCAGTTCGA CGGGCTGGCC TCGCCCATCA ACAGCCTGTG GAACTTCGGC
GCCACCGACA TGGACACGGC CTTCTACGAC CGTGTGGAAA TCGTGCGCGG CGCCACGGGC
CTGCTCAATG GCTCGGGCGA TCCGTCGGCC ACGGTGAACT TCGTGCGCAA GCAGCCGCGC
GAGACGGCGG GCGGCCATAC CTCGCTGACG CTGGGCCGCT GGAACCTTCG CCGCGCCGAG
GCCGATCTGT CCCTGCCGCT GGACCGCGAA GGCCGCGTCC ATGGCCGTGT CGTGGCCGTG
CAATCGGACA GCGATAGCTA CGTCAGCCAC TTTGGCCAGC GCAGGCAGGG CCTGTACGCC
GTGGTCAGCG CGGCCCTGAC GCCCGCCACC CGGCTCGTGA CCAGCCTCGA ATACCAGAAG
AACACCAGCC CCGGCATGGG CGCCGGCTTT CCGCTGTTCT ATGCGGACGG CAGCCGCACG
GACTTCGACC GCTCGGTGTC CAACAACGCG CGCTGGTCGC ATTTCGGCAC GGAGAACACC
ACGGCCACGC TGGACCTGAC CCACCGCCTG GACAACCGCT GGCTGCTGCG CGCCGCCTAC
AGCCGCAACG ACGGCAACTA CGACATGCGC TACGTCTACC GGGGCGGCGC GCCGGACGCC
AGCACCGGCC TGGGCATGGC CAACTCCTTC ATCAAGTACC GGGGCGACCG CTCGCGCGAC
AGCCTGCACC TCACGGCCAG CGGCCCGGTC GCGCTGTTCG GGCGCCAGCA CGAGATTGCC
GTGGGATGGA ACCATGTGCG CGACGATATC GACATCCGCC GCTATGCACC GCTGGGCACG
CCGCCTGCCA CGGACAACTT CCTCGACTGG CGCAACGGCA GCCTGGCCGA GCCGGGCTGG
TCCGACGCCT CCAACGGCGG CGACGACAGC CGCATGCGCC AAAGCGGCGG CTATGCCGTG
GGGCGTTTCT CGCTGGCCGA TGGCTGGACG GCCGTGGCCG GCGCCCGCCT GAGCCGCTGG
TCCACGCGCC AGAATTACTT CGGCAGCCTG CGCGACTACC GCTACAGCAA CGAAATCACG
CCCTACGCCG GCCTGCTGTG GGACATCGAT GCCCGGCACA CGGCCTACCT GAGCTACACG
GAAATCTTCA CGCCCCAGAA CTACCGCGAC AAGCAAGGCA GCATCCTGGA CCCCGTCACC
GGCCAGGCCT TCGAGCTGGG CCTCAAGGGC TCCTGGCTGC AGGACCGGCT GCAGGGTTCT
GCCGCGCTGT TCCAGACCCG CCAGGACAAC CTGGCGCAGG ACACAGGCGA ATTCATCGAC
GGCACCACAG ACCAGAAGGC CTATCGCGGC GTCAAGGGCG CGCAGGTGCG CGGCATCGAT
CTGGAACTCA GCGGCGAGCC GGCCCGGGGC TGGCGCCTGG GCGCCAGCTA CACGCACTAC
ACGGCACGCA GCGCCAGCGG CGCCGCCTTC AACACCACGC ACCCGCGCAG CCTGGTCAAG
CTCACGGCCA TGCGCAGCTT CGAGGGTGCG CTGCAGGGCC TGAGCCTGGG CGGCAACCTG
CGCTGGCAAA GCCGCATCTG GCAGAACGTG ACCAACCCGC TGCGCCAGAG CGTGCAGGTC
GGCCAGGGCA GCTACCTGGT GGTCAACCTC TCGGCCCACT ACCGCATCGA CCCCACCTGG
TCGGCCAGCG TGCAGCTCAA CAACCTGCTG GACCGCCAGT ACTACAGCCA GATCGGCTTC
TACAACCAGG GCTGGTGGGG CGAGCCGCGC AATCTGACGG TGAGCCTGAA GGCGGATTTC
TGA
 
Protein sequence
MMSIRIQNPA PRHLQGARTP LSLLICALCA APAPAVWAAD EDRPPARNSD TELGTVTVRA 
AADAGTTEGT ARYTSGSTGT ATGLQLSARE TPQSVSVITR QLMDDAGQLT VSQTLEASAP
GLSVSRSDSN RYQFSSRGFG VSNFQFDGLA SPINSLWNFG ATDMDTAFYD RVEIVRGATG
LLNGSGDPSA TVNFVRKQPR ETAGGHTSLT LGRWNLRRAE ADLSLPLDRE GRVHGRVVAV
QSDSDSYVSH FGQRRQGLYA VVSAALTPAT RLVTSLEYQK NTSPGMGAGF PLFYADGSRT
DFDRSVSNNA RWSHFGTENT TATLDLTHRL DNRWLLRAAY SRNDGNYDMR YVYRGGAPDA
STGLGMANSF IKYRGDRSRD SLHLTASGPV ALFGRQHEIA VGWNHVRDDI DIRRYAPLGT
PPATDNFLDW RNGSLAEPGW SDASNGGDDS RMRQSGGYAV GRFSLADGWT AVAGARLSRW
STRQNYFGSL RDYRYSNEIT PYAGLLWDID ARHTAYLSYT EIFTPQNYRD KQGSILDPVT
GQAFELGLKG SWLQDRLQGS AALFQTRQDN LAQDTGEFID GTTDQKAYRG VKGAQVRGID
LELSGEPARG WRLGASYTHY TARSASGAAF NTTHPRSLVK LTAMRSFEGA LQGLSLGGNL
RWQSRIWQNV TNPLRQSVQV GQGSYLVVNL SAHYRIDPTW SASVQLNNLL DRQYYSQIGF
YNQGWWGEPR NLTVSLKADF