Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3531 |
Symbol | |
ID | 5749116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 3878976 |
End bp | 3881198 |
Gene Length | 2223 bp |
Protein Length | 740 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641298634 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001564552 |
Protein GI | 160898970 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.313722 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00643483 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATGAGCA TTCGCATTCA AAACCCCGCC CCGCGACACC TCCAAGGCGC GCGGACCCCG CTATCCCTGC TGATCTGCGC CCTGTGTGCC GCCCCTGCGC CAGCAGTCTG GGCCGCCGAC GAGGACAGGC CCCCTGCCAG GAACAGCGAC ACCGAACTGG GCACCGTCAC CGTGCGCGCC GCCGCCGATG CGGGCACCAC CGAAGGCACG GCGCGCTACA CCAGCGGTTC CACGGGAACG GCCACGGGCC TGCAACTGTC GGCACGCGAG ACACCGCAGT CGGTCAGCGT GATCACGCGC CAGCTCATGG ACGATGCCGG CCAGCTCACG GTCTCGCAGA CGCTGGAGGC CTCCGCCCCC GGCCTGTCGG TCAGCCGCAG CGACAGCAAC CGCTATCAGT TTTCCTCGCG CGGCTTTGGC GTCAGCAACT TCCAGTTCGA CGGGCTGGCC TCGCCCATCA ACAGCCTGTG GAACTTCGGC GCCACCGACA TGGACACGGC CTTCTACGAC CGTGTGGAAA TCGTGCGCGG CGCCACGGGC CTGCTCAATG GCTCGGGCGA TCCGTCGGCC ACGGTGAACT TCGTGCGCAA GCAGCCGCGC GAGACGGCGG GCGGCCATAC CTCGCTGACG CTGGGCCGCT GGAACCTTCG CCGCGCCGAG GCCGATCTGT CCCTGCCGCT GGACCGCGAA GGCCGCGTCC ATGGCCGTGT CGTGGCCGTG CAATCGGACA GCGATAGCTA CGTCAGCCAC TTTGGCCAGC GCAGGCAGGG CCTGTACGCC GTGGTCAGCG CGGCCCTGAC GCCCGCCACC CGGCTCGTGA CCAGCCTCGA ATACCAGAAG AACACCAGCC CCGGCATGGG CGCCGGCTTT CCGCTGTTCT ATGCGGACGG CAGCCGCACG GACTTCGACC GCTCGGTGTC CAACAACGCG CGCTGGTCGC ATTTCGGCAC GGAGAACACC ACGGCCACGC TGGACCTGAC CCACCGCCTG GACAACCGCT GGCTGCTGCG CGCCGCCTAC AGCCGCAACG ACGGCAACTA CGACATGCGC TACGTCTACC GGGGCGGCGC GCCGGACGCC AGCACCGGCC TGGGCATGGC CAACTCCTTC ATCAAGTACC GGGGCGACCG CTCGCGCGAC AGCCTGCACC TCACGGCCAG CGGCCCGGTC GCGCTGTTCG GGCGCCAGCA CGAGATTGCC GTGGGATGGA ACCATGTGCG CGACGATATC GACATCCGCC GCTATGCACC GCTGGGCACG CCGCCTGCCA CGGACAACTT CCTCGACTGG CGCAACGGCA GCCTGGCCGA GCCGGGCTGG TCCGACGCCT CCAACGGCGG CGACGACAGC CGCATGCGCC AAAGCGGCGG CTATGCCGTG GGGCGTTTCT CGCTGGCCGA TGGCTGGACG GCCGTGGCCG GCGCCCGCCT GAGCCGCTGG TCCACGCGCC AGAATTACTT CGGCAGCCTG CGCGACTACC GCTACAGCAA CGAAATCACG CCCTACGCCG GCCTGCTGTG GGACATCGAT GCCCGGCACA CGGCCTACCT GAGCTACACG GAAATCTTCA CGCCCCAGAA CTACCGCGAC AAGCAAGGCA GCATCCTGGA CCCCGTCACC GGCCAGGCCT TCGAGCTGGG CCTCAAGGGC TCCTGGCTGC AGGACCGGCT GCAGGGTTCT GCCGCGCTGT TCCAGACCCG CCAGGACAAC CTGGCGCAGG ACACAGGCGA ATTCATCGAC GGCACCACAG ACCAGAAGGC CTATCGCGGC GTCAAGGGCG CGCAGGTGCG CGGCATCGAT CTGGAACTCA GCGGCGAGCC GGCCCGGGGC TGGCGCCTGG GCGCCAGCTA CACGCACTAC ACGGCACGCA GCGCCAGCGG CGCCGCCTTC AACACCACGC ACCCGCGCAG CCTGGTCAAG CTCACGGCCA TGCGCAGCTT CGAGGGTGCG CTGCAGGGCC TGAGCCTGGG CGGCAACCTG CGCTGGCAAA GCCGCATCTG GCAGAACGTG ACCAACCCGC TGCGCCAGAG CGTGCAGGTC GGCCAGGGCA GCTACCTGGT GGTCAACCTC TCGGCCCACT ACCGCATCGA CCCCACCTGG TCGGCCAGCG TGCAGCTCAA CAACCTGCTG GACCGCCAGT ACTACAGCCA GATCGGCTTC TACAACCAGG GCTGGTGGGG CGAGCCGCGC AATCTGACGG TGAGCCTGAA GGCGGATTTC TGA
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Protein sequence | MMSIRIQNPA PRHLQGARTP LSLLICALCA APAPAVWAAD EDRPPARNSD TELGTVTVRA AADAGTTEGT ARYTSGSTGT ATGLQLSARE TPQSVSVITR QLMDDAGQLT VSQTLEASAP GLSVSRSDSN RYQFSSRGFG VSNFQFDGLA SPINSLWNFG ATDMDTAFYD RVEIVRGATG LLNGSGDPSA TVNFVRKQPR ETAGGHTSLT LGRWNLRRAE ADLSLPLDRE GRVHGRVVAV QSDSDSYVSH FGQRRQGLYA VVSAALTPAT RLVTSLEYQK NTSPGMGAGF PLFYADGSRT DFDRSVSNNA RWSHFGTENT TATLDLTHRL DNRWLLRAAY SRNDGNYDMR YVYRGGAPDA STGLGMANSF IKYRGDRSRD SLHLTASGPV ALFGRQHEIA VGWNHVRDDI DIRRYAPLGT PPATDNFLDW RNGSLAEPGW SDASNGGDDS RMRQSGGYAV GRFSLADGWT AVAGARLSRW STRQNYFGSL RDYRYSNEIT PYAGLLWDID ARHTAYLSYT EIFTPQNYRD KQGSILDPVT GQAFELGLKG SWLQDRLQGS AALFQTRQDN LAQDTGEFID GTTDQKAYRG VKGAQVRGID LELSGEPARG WRLGASYTHY TARSASGAAF NTTHPRSLVK LTAMRSFEGA LQGLSLGGNL RWQSRIWQNV TNPLRQSVQV GQGSYLVVNL SAHYRIDPTW SASVQLNNLL DRQYYSQIGF YNQGWWGEPR NLTVSLKADF
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