| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3528 |
|---|
| Symbol | |
|---|
| ID | 5749113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3874504 |
|---|
| End bp | 3876405 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641298631 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001564549 |
|---|
| Protein GI | 160898967 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00681289 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00698829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATCG ACTCCACCAT TGTGCGTGCA GCCATACACC CGGGAATTGG TGTGGCGCGT
ATTGGCAATA GTCCGGATGA GTACTATGTC GGCCCCGAGC TGATGCATGT GCCGCCCATG
GCGCCGGGCA GCCTGCGCGA TGCGCAGGGC GCGCTCAAGC GCCAGGCTGC GCGCTTTCGC
ATCTACGGCT ACAACGCCGC GGGCGAGGTG GTGCGTGAAC TCACGGCCGA CCAGGACCAG
ATCGAATGGG AAGTCGAGCT GGCCAATACC AAGGCTGCCT GGTATCAATT CCAATTGGCG
CTGGACGTGC CTGAAGCCGC AACGGCCGAT CCCACGATTT TGCGCAATGC CACGGTGAAG
GACCGGAAAA GCCTGGCCAT TCGACCCGGA GCCCGCCGCA TTGCCAATGG CTCGGCCCCG
GTGGCATTCG ACAGCGGCAG TTTCTGCGGC AAGCCGGTTT ATCTGGGCGA ATTGCGCATT
GAAAAGACGG GCCAGCTTCT CGTGCTGGGA GGCCGTGGCG TCTCTGCCTC CGTGGATGGC
TCCAAGGCCA CCACGTTTGC GAACAACGAG GGCTGGCATG ACGATGTGGC CGACGGCCCC
GTGCGTGCCA AGGTCGTCGT GGCCGGCGCT TCCGTGCCGG TGGATGCGGC ATGGGTCACG
GTTGCGCCGC CCAACTACGG CCCGCAGATG AAGTCGGTGC GCACCATGAA GGACCTGATG
GAGGATGTGT ACATCCACTC GGGCATGGCC GCCTTCCCGC CGCACGTCTC CTTCAGCCGG
CACATCCTGC CCATACTCCA GCGCCAGAGC AGCCTGCAGT GGGCGAACAA GGGCTTTGCA
TCCCAGTTCG GCTGGGGCGG GGCGGCCAGT GTGGATGACG AGGCGTGGAT CGCCAGGCTC
AACAGCCCGG GCACGACCTG GGCCGAGCTG CGCCAGCAGG TGGCCAATGC CTTCCGCCGT
TTTGACCGTG ATGGCGCATC TCCCCAGCCC TGGCCCTGGC TGTATGGCGA CGCCATGGCC
GTGCCGCCCG CCGACACACC GCGCCAGCAT GCGGCGCTGA CGGCCACGCA GCTGAGGATG
CTGGATCTGT GGGCCGGTGG CCATTTCCTG TCCGACTGGA AGCCCGGCCA GCAGTACCCT
GCCCAGCTCG CCGACGTGCC GCTGCAGGAG CAGCCGGCCA TGCTCGACCA TGCCGCCATG
GACGACTGCC TGGCCGACGC CTTCCACCCG GGCTGCGAGA TCACCTGGCC CATGCGGCAC
GCCAGCATGT ACCGGGCGCC GTTCCGCATC CGCGAGGCGG CAGTGAACCC GCCCGAGCTG
CAGCTCTACG GCTCCCGGCT CACGCCTGCG GTGGCCCTGT CCGAGAGCGG GCCTCTGTAT
GCGCAGGTGG CCGGCGACCT CACGCGCTGG ATGGCGGTCC CCTGGCAGAC CGACACCGCC
AGCTGCCGCA GCGGCTATTA CGCCGGCTAT GGCCCACGCT ACGACCCCTA CCTGCCCACG
TTCTGGCCGG CCCGCGTGCC CAACCAGGTG CTGACGCAGG AGGCCTATGA AAGGGTCATC
GACACGGAGC TGCCGCGCGA GCAGCGTGTC GCCGCCTTCA ACCGGCGCGA GTCGTGGTTC
CGCACACTGG GTGAGGAAGG CTATGAGAGC GAGATCAACC GCATGATCAG CCACTTCGGT
GACATGGGCG TCATCGAGAG TCGGCCCGGC CTGCGGGGCG ACAAGGACTT CCCGCCGGTG
ATGCAGGTGG AAAACCGCAT CGCCCCGGCG CCGTCGCACA TGCTCAAGAC TGCGCAGCAA
CCGGACGGGC AGGAGGCGCC TCCCCGCATC GAGCCCTTCG ATGCAGACAA CGAGCAGCAG
TTGCGCGCCA TGACGCAGCG CGGCCCGGTG CTGCCGCGCT GA
|
|---|
| Protein sequence | MGIDSTIVRA AIHPGIGVAR IGNSPDEYYV GPELMHVPPM APGSLRDAQG ALKRQAARFR
IYGYNAAGEV VRELTADQDQ IEWEVELANT KAAWYQFQLA LDVPEAATAD PTILRNATVK
DRKSLAIRPG ARRIANGSAP VAFDSGSFCG KPVYLGELRI EKTGQLLVLG GRGVSASVDG
SKATTFANNE GWHDDVADGP VRAKVVVAGA SVPVDAAWVT VAPPNYGPQM KSVRTMKDLM
EDVYIHSGMA AFPPHVSFSR HILPILQRQS SLQWANKGFA SQFGWGGAAS VDDEAWIARL
NSPGTTWAEL RQQVANAFRR FDRDGASPQP WPWLYGDAMA VPPADTPRQH AALTATQLRM
LDLWAGGHFL SDWKPGQQYP AQLADVPLQE QPAMLDHAAM DDCLADAFHP GCEITWPMRH
ASMYRAPFRI REAAVNPPEL QLYGSRLTPA VALSESGPLY AQVAGDLTRW MAVPWQTDTA
SCRSGYYAGY GPRYDPYLPT FWPARVPNQV LTQEAYERVI DTELPREQRV AAFNRRESWF
RTLGEEGYES EINRMISHFG DMGVIESRPG LRGDKDFPPV MQVENRIAPA PSHMLKTAQQ
PDGQEAPPRI EPFDADNEQQ LRAMTQRGPV LPR
|
|---|
| |