Gene Daci_3506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3506 
Symbol 
ID5749091 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3853088 
End bp3854317 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content68% 
IMG OID641298609 
Productnucleoside recognition domain-containing protein 
Protein accessionYP_001564527 
Protein GI160898945 
COG category[R] General function prediction only 
COG ID[COG2715] Uncharacterized membrane protein, required for spore maturation in B.subtilis. 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.848291 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.806828 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAATG CCTTGTGGCT GGGCTTTTTT CTGGTGGCGG CCGTGGCTGC GCTGGCGCAA 
TGGCTGGTCG GCGGTCAGGT CGGGATTTTC TCGGCCATGG TGCAGGCGCT GTTTGCCATG
GCCAGGCTGT CGGTCGAGGT CATGGTGCTG CTGTTCGGCA CGCTGACGCT GTGGCTGGGC
TTTCTGCGCA TCGCAGAGAA GGCCGGCGTG GTGGAGTGGC TGGCGCGCGT GCTGGGCCCG
TTGTTCGCCA GGCTCATGCC CGAGGTGCCG CGCGGCCATC CGGCCCTGGG CCTGATCACG
CTGAACTTCG CGGCCAACGG GCTGGGACTG GACAACGCGG CCACGCCCAT GGGCCTGAAG
GCCATGCGCT CGCTGCAGGA GCTCAATCCC CGGCCCGACA CCGCCACCAA TGCGCAGATC
CTGTTCCTGG TGCTCAATGC GTCGTCGCTG ACCTTGCTGC CCGTGACCAT CTTCATGTAC
CGCATGCAGC AGGGTGCGCC CGATCCCACC CTGGTCTTTC TGCCGATCTT GCTGGCCACC
TCGGCCTCGA CACTGGTCGG CCTGCTGGCC GTGGCCGCCG TGCAGAGGCT GCCGCTGTGG
AGCCCCGTGG TGCTGGGCTA CCTGCTGCCG CTGGGCCTGG CGCTGGCGGG CTTCATGGCC
TTTCTGGCCA CGCTGTCGGC GGCCGCGCTG GCGCAGCTGT CATCGCTGCT GGGCAACCTG
ACGCTGTTTG CCCTGATCGT GCTGTTCGTC ACCCTGGGCG CCTGGCGCAA GGTCGCGGTC
TACGACAGCT TCATCGAAGG CGCCAAGGAA GGCTTTGACG TGGCCAAGGG CCTGCTGCCC
TACCTGGTGG CCATGCTCTG CGCCGTGGGC GTGTTCCGCG CATCGGGTGC GCTGGAGTAC
GCGCTGTCGG GCATACGCTG GGTGGTCGAT GCCCTGGGCA TGGACGCCCG CTTCGTGGAC
GCCCTGCCCA CGGCCCTGGT CAAACCCTTC TCGGGCAGCG CGGCGCGCGC CATGCTGATC
GAGACCATGC AGACCCAGGG CGTGGACAGC TTCGCCGCCC TGGTGGCCGC CACCATCCAG
GGCAGCACCG AAACCACCTT CTACGTCCTG GCCGTCTACT TCGGCGCCGT GGGCATACAG
CGCGCCCGCC ACGCCGTGCC CTGCGCCCTC ATCGCCGAAC TGGCCGGCGT GATGGCGGCC
ATCGTGGTCT GCTACAAGTT CTTTGGCTGA
 
Protein sequence
MLNALWLGFF LVAAVAALAQ WLVGGQVGIF SAMVQALFAM ARLSVEVMVL LFGTLTLWLG 
FLRIAEKAGV VEWLARVLGP LFARLMPEVP RGHPALGLIT LNFAANGLGL DNAATPMGLK
AMRSLQELNP RPDTATNAQI LFLVLNASSL TLLPVTIFMY RMQQGAPDPT LVFLPILLAT
SASTLVGLLA VAAVQRLPLW SPVVLGYLLP LGLALAGFMA FLATLSAAAL AQLSSLLGNL
TLFALIVLFV TLGAWRKVAV YDSFIEGAKE GFDVAKGLLP YLVAMLCAVG VFRASGALEY
ALSGIRWVVD ALGMDARFVD ALPTALVKPF SGSAARAMLI ETMQTQGVDS FAALVAATIQ
GSTETTFYVL AVYFGAVGIQ RARHAVPCAL IAELAGVMAA IVVCYKFFG