| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3478 |
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| Symbol | |
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| ID | 5749063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3810630 |
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| End bp | 3812120 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641298581 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001564499 |
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| Protein GI | 160898917 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.289854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACATC GCGCCGCATC CGGAGATCCG TGGAGCCTTC CACAAGTTGC AACGCCCTGG
CGGGACAGCT TTGTGCTGGG CGGGGTGCTG TTTCTGTGCT CGGCCGTGGC GCTGGGCCTT
CGCTCTCCGG AGCATCTGTC GTCCCTGTGG CTGTCCAACG CCCTGCTGCT GGGCTGGATG
CTTCGCAGCC CTGCCTACAG CCATAGACAC GGCTGGACGG CTGCCGCCAT TGCCATGGCG
CTGGCCGAAT GGCTTTCTGG CAGTCCGCTG GACCAGACCC TGTGGCTGAC CTTTGCCGAC
CTGGCCGCCG TGGCCTGCGG CTGGGTGATG ATGCGGCGCC TGCCGCAGCG GGTGCAGCAG
ATGCGCTCCC CTTCCTCGGT GCTGCATCTG GTGATGTGCA GCCTGCTGGT GAGCGTGGTC
GGAGCCGTGC TGGGCTCGGC AGGCATGCAC CATCTCATGC ATTGGCCCTG GCAGCCCATG
ATGGCCATGT GGTTCAGCAG CGAGTTGATG CACATGACCC TGTTGCTGCC TGTGCTGCTG
AGCCTTCCGG CAAAGCTGGA GCCGCTGTCC TGGCGCAGCC AGCCATTCAA ACAAACGGCG
CAGGCCTTGC TGCCGCTGCT TGCCCTGGCG ATTTCCGAAT CCATTGCCAT CTACCTGGGC
GGACCAGGCG CGCTGTCGCT CACCATGCCG GCCATGCTGC TGTGCGCCAT GCGCTATCGG
CTGTTCGTGG TCGCCCTGCT CAACCTGGTC AGCTGCGCCA TCAAGCTGGC CACGTTTTCC
CATGTGTTGT TCAGCTCGCC CGGCACCGAG CTGGAGACGA CGTTCTCCTT CCGCCTGGGT
CTGGCCATGC TGTCGATCGG CCCGCTGGCC GTAGCCTGCA CGCTCATGGC TTTCAAGGAC
ATGCTCAGCA AGCTGCGCCA TGCAGTGAAC CACGATGCGC TGACGGGACT GCTGGCACGC
ACCAGCTTTC TGGAGCGCGC ACAGCGCACG CTGGAGCGCC TGCAGCGCGA GCGCCAGTCA
GGCGCCATGC TGATGCTCGA CCTGGACCAC TTCAAGCACA TCAACGACCG CCATGGCCAT
GCCGCCGGCG ACCGGGTGCT GCAGGAAGTC TCGGCCCGCC TGTCGCAGGC GCTGCGTCCG
CATGAGCTCA TAGGCCGCCT GGGCGGCGAG GAGTTTGCGG TGCTGCTGCC CGGTGCCGAC
TGCGTCACGG CCAGAGCCGT GGCCCAGCGG CTGTGCGAGG CCACGCGCGA AATTCGCATC
GACATGAACG ATGGCGCAGC CATCTGCCCC ACTCTGAGCA TTGGCATAGG CTGCACGAAC
ATGGCCTACC CACCGCTGGG TTTGAGTGCC TTGCTGCGCA TGGCCGATAC GGCGCTGTAC
CAGGCCAAGG CCAGCGGCCG CGACCGCTAC TTCGTGGCCG GCGAGCGGCC GGGCGAGGCC
GACTCACCGG CCTTTGCCTG CGAGCATTCC GGGGGCGCCA AAGCGGCCTG A
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| Protein sequence | MSHRAASGDP WSLPQVATPW RDSFVLGGVL FLCSAVALGL RSPEHLSSLW LSNALLLGWM
LRSPAYSHRH GWTAAAIAMA LAEWLSGSPL DQTLWLTFAD LAAVACGWVM MRRLPQRVQQ
MRSPSSVLHL VMCSLLVSVV GAVLGSAGMH HLMHWPWQPM MAMWFSSELM HMTLLLPVLL
SLPAKLEPLS WRSQPFKQTA QALLPLLALA ISESIAIYLG GPGALSLTMP AMLLCAMRYR
LFVVALLNLV SCAIKLATFS HVLFSSPGTE LETTFSFRLG LAMLSIGPLA VACTLMAFKD
MLSKLRHAVN HDALTGLLAR TSFLERAQRT LERLQRERQS GAMLMLDLDH FKHINDRHGH
AAGDRVLQEV SARLSQALRP HELIGRLGGE EFAVLLPGAD CVTARAVAQR LCEATREIRI
DMNDGAAICP TLSIGIGCTN MAYPPLGLSA LLRMADTALY QAKASGRDRY FVAGERPGEA
DSPAFACEHS GGAKAA
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