Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3474 |
Symbol | |
ID | 5749059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 3804112 |
End bp | 3805293 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641298577 |
Product | diguanylate cyclase |
Protein accession | YP_001564495 |
Protein GI | 160898913 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0624369 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATGTGT CACTCGATAC CGATCGCCTC TATGTATTGA TTGCGCCGCT GAGCATTCTG CTGCTCAGTT GCACGCTGGC CGTGTGCTGG CTGGTGCAGC GGCGCCAGCG CTACCTGCTG TGGATTGCGG GCGGATACGC CCTGGTTTCT CTGGCGCTGG CCTGGCAAAG CCTTGCACCC CGGGAAGAAC TGCACCACTG GGCCGTGTTC ACGGGCGCCA TGTATCTGTT CGGCACCTGG TGCTTCGCGC GCTGCATGGC GGGGCGCTAT GGCGTCTCGG CCCATCCCTT GCTGGGGCTG CTCATAGGCG CCGTCGTCCT GGCTGCGCTG TACTACTACA GCCGGGTCCA GGTCGATCTG TGGGTGCGCG TGCACTGGCT CAACACCGGC CTGGGCCTGC TGCAGATGCT GCCGGCGCCC GCCATGCTGC GGCGCCGGCC GCCGCAGGAC TGGCTGGAGA GAATGCTCTA CTGGTCCTAC GTGGTGTTTG CCGGCTACAC CGCTGCCCGG CCGCTGCTGG TGCTGGCCCT GGGCAGCACC GATCTCAACG AGATTGCACG CTCCACCTAC TGGCTGGTGA CCCTGGTCAG CACGCTGTCG TTTGCGCTGC TGTTCACCCT CATGCTGCTG GCGTGCACGG TGCGCGATGT CTTCACCGCG CTGCGCGAGG AGCGCAACCA CGACTCGCTG ACCAACCTGC TCAACCGCCG CGCCTTCCAG GAGGCTGCCG AGCTGCGCCT GGCCGATCCG CACATGGCCC CGATCTCCGT GCTGATAGGC GACATAGACC ACTTCAAGCG CATCAATGAC AGCTGGGGGC ATGACTGCGG AGACCGTGTA TTGCAGGCCG TGGCCCAGAC CCTGCAGCAA CACGTGCGCA ACGACGATCT GGTATGCCGC TTTGGCGGCG AGGAATTCGT GCTCCTGCTG ATGCGCACCA CGCCCCAGGA GGCCGAGCGC GTGGCCCAGC GCATACGCGC CCAGCTCAGC GCGGACGGCT ATGTGCTGGC GGCCGGCCAG CGGGTGACCA TCAGCTTCGG CATCGCACCC GTGGCCGCCA ACACCGCCTT GACCGATGCG CTGACGCGCG CCGACGGCCT GCTGTATGCC GCCAAGCAGG CGGGCCGCGA CCGCGTGCAT GTGGCCACGG ACCCTGGCCG CAGGGTGCCG CAGGCCGTCT GA
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Protein sequence | MDVSLDTDRL YVLIAPLSIL LLSCTLAVCW LVQRRQRYLL WIAGGYALVS LALAWQSLAP REELHHWAVF TGAMYLFGTW CFARCMAGRY GVSAHPLLGL LIGAVVLAAL YYYSRVQVDL WVRVHWLNTG LGLLQMLPAP AMLRRRPPQD WLERMLYWSY VVFAGYTAAR PLLVLALGST DLNEIARSTY WLVTLVSTLS FALLFTLMLL ACTVRDVFTA LREERNHDSL TNLLNRRAFQ EAAELRLADP HMAPISVLIG DIDHFKRIND SWGHDCGDRV LQAVAQTLQQ HVRNDDLVCR FGGEEFVLLL MRTTPQEAER VAQRIRAQLS ADGYVLAAGQ RVTISFGIAP VAANTALTDA LTRADGLLYA AKQAGRDRVH VATDPGRRVP QAV
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