Gene Daci_3474 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3474 
Symbol 
ID5749059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3804112 
End bp3805293 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content67% 
IMG OID641298577 
Productdiguanylate cyclase 
Protein accessionYP_001564495 
Protein GI160898913 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0624369 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATGTGT CACTCGATAC CGATCGCCTC TATGTATTGA TTGCGCCGCT GAGCATTCTG 
CTGCTCAGTT GCACGCTGGC CGTGTGCTGG CTGGTGCAGC GGCGCCAGCG CTACCTGCTG
TGGATTGCGG GCGGATACGC CCTGGTTTCT CTGGCGCTGG CCTGGCAAAG CCTTGCACCC
CGGGAAGAAC TGCACCACTG GGCCGTGTTC ACGGGCGCCA TGTATCTGTT CGGCACCTGG
TGCTTCGCGC GCTGCATGGC GGGGCGCTAT GGCGTCTCGG CCCATCCCTT GCTGGGGCTG
CTCATAGGCG CCGTCGTCCT GGCTGCGCTG TACTACTACA GCCGGGTCCA GGTCGATCTG
TGGGTGCGCG TGCACTGGCT CAACACCGGC CTGGGCCTGC TGCAGATGCT GCCGGCGCCC
GCCATGCTGC GGCGCCGGCC GCCGCAGGAC TGGCTGGAGA GAATGCTCTA CTGGTCCTAC
GTGGTGTTTG CCGGCTACAC CGCTGCCCGG CCGCTGCTGG TGCTGGCCCT GGGCAGCACC
GATCTCAACG AGATTGCACG CTCCACCTAC TGGCTGGTGA CCCTGGTCAG CACGCTGTCG
TTTGCGCTGC TGTTCACCCT CATGCTGCTG GCGTGCACGG TGCGCGATGT CTTCACCGCG
CTGCGCGAGG AGCGCAACCA CGACTCGCTG ACCAACCTGC TCAACCGCCG CGCCTTCCAG
GAGGCTGCCG AGCTGCGCCT GGCCGATCCG CACATGGCCC CGATCTCCGT GCTGATAGGC
GACATAGACC ACTTCAAGCG CATCAATGAC AGCTGGGGGC ATGACTGCGG AGACCGTGTA
TTGCAGGCCG TGGCCCAGAC CCTGCAGCAA CACGTGCGCA ACGACGATCT GGTATGCCGC
TTTGGCGGCG AGGAATTCGT GCTCCTGCTG ATGCGCACCA CGCCCCAGGA GGCCGAGCGC
GTGGCCCAGC GCATACGCGC CCAGCTCAGC GCGGACGGCT ATGTGCTGGC GGCCGGCCAG
CGGGTGACCA TCAGCTTCGG CATCGCACCC GTGGCCGCCA ACACCGCCTT GACCGATGCG
CTGACGCGCG CCGACGGCCT GCTGTATGCC GCCAAGCAGG CGGGCCGCGA CCGCGTGCAT
GTGGCCACGG ACCCTGGCCG CAGGGTGCCG CAGGCCGTCT GA
 
Protein sequence
MDVSLDTDRL YVLIAPLSIL LLSCTLAVCW LVQRRQRYLL WIAGGYALVS LALAWQSLAP 
REELHHWAVF TGAMYLFGTW CFARCMAGRY GVSAHPLLGL LIGAVVLAAL YYYSRVQVDL
WVRVHWLNTG LGLLQMLPAP AMLRRRPPQD WLERMLYWSY VVFAGYTAAR PLLVLALGST
DLNEIARSTY WLVTLVSTLS FALLFTLMLL ACTVRDVFTA LREERNHDSL TNLLNRRAFQ
EAAELRLADP HMAPISVLIG DIDHFKRIND SWGHDCGDRV LQAVAQTLQQ HVRNDDLVCR
FGGEEFVLLL MRTTPQEAER VAQRIRAQLS ADGYVLAAGQ RVTISFGIAP VAANTALTDA
LTRADGLLYA AKQAGRDRVH VATDPGRRVP QAV