| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3393 |
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| Symbol | |
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| ID | 5748978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3729543 |
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| End bp | 3731360 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641298497 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001564416 |
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| Protein GI | 160898834 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.025265 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCAC CATCCTCACC GCCGCCGGCC CCTGCGCCGT CCGCCGCACC GGCGGCCCTT
GATCTCGCCA GCACCCTGAC CCTGTCGCAG CGCCTCAAGC GCCTGTCACC CTACTTTGGT
GGCCAGCGCC TGGCCTGGAC GCTGGCGGTG GCCGCCACGC TGGTGGGCGC GGTCACCGAG
CCATTGATCC CTGCCCTGCT GCAGCCGCTG CTGGACAGCG GCTTCACCGA CGGCACGCTG
CCACTGTGGT CGGTGCCGCT GGCCATCATC GGCGTGTTCC TGGTGCGGGG CCTGTCGCAG
TTCGTGGGCC AGTACGCGCT GGCGCGCATT GCCAACGAGG GCATGCTGGC GCTGCGCAAG
CGCCTGTTCG AGCGGCTGCT GGCGGCCGAT ATGGCGCTGT TCTCGCGCCA GTCGGCCTCA
TCGCTGTCCA ATACCGTGGT CTATGAGGTG CAGACCGGCT CCACGCTGCT GGTGCAGGCC
ATGCTGGGCA TCTCGCGCGA CGGTTTCACG CTGGTGGCGC TGCTGGGCTA CCTGCTGTAT
CTGAACTGGC AGCTGACGCT GGTGGTGGCG GCCGTGGTGC CGGGCGTGGC CTGGATCATG
AAGACGCTGT CGCGCCGCCT GTACCGCATC ACCAAGATCA GCCAGGAGGC CACCGATTCC
CTGGCCTATG TGGTGGAAGA GAACGTTCTG GCCCACCGCA TGGTGCGCCT GCATGGCGCG
CAACAGGGCC AGCAAAAGCG CTTTGGCGGC CTGAGCGGGC AGCTGCGCAA GCTGGCCATC
AAGGCCACCA TCGCCTCGGC GGCCATGACG CCGCTGACCC AGTTGCTGGC CGCCGCCGCC
CTGTCGGCCG TGATCTGCAT TGCGCTGTGG CAAAGCCGGG GCACGGGCGC TGCTGCGGCC
AATGTGCAGG ATGTGACGGT GGGCAGCTTT GCGGCCTTCA TCACGGCCAT GCTGATGCTG
ATTGCCCCTA TCCGCCGCCT GGCCGATGTG GCCAACCCCA TCACGCGTGG CGTGGCGGCG
CTGGAGCGGG GCCTGCATCT GCTGGAGGGC TCGGGCGACG AGACCGGCGG CACCCAGGTG
CCCGGCAAGG CGCGCGGCGA GATCGAGTTG CGCGACGTGT CCGTGCAGTT TGGCGAGGAC
AAGGCCCCCG CCCTGAGCCA TGTGGACCTG CGCGTGCGCC CGGGCGAGGT GGTGGCCCTG
GTCGGCCCCT CCGGCGCGGG CAAGACCACG CTGGTGAACC TGCTGCCACG CTTTTTGCAG
CCCACGGGCG GCCAGTTGCT GCTGGACGGA ACGCCCCTGC CCGAATGGGA TCTGGCCGCG
TTGCGCCAGC AGTTCGCCAT GGTCAGCCAG GACGTGGTGA TGTTCAACGA CACCATTGCC
GCCAACGTGG CGCTGGGCGG GGTGGAAGAC GAGGCCCAGC TGTGGGCCGC GCTGGATGCC
GCCAATCTGG GCACCCACGT GCGCGGCCTG TCCAACGGCC TGCATACGGT GGTAGGCCAC
AACGCCAGCC AGTTGTCGGG GGGCCAGCGC CAACGGCTGG CGATTGCACG GGCGCTGTAC
AAGGATGCGC CCATCCTGAT CCTGGACGAG GCCACTTCGG CCCTGGACAA CGAATCCGAG
CGCCTGGTGC AGGAGGCGCT GACGCGGCTG ATGCAGGGCC GCACGACCCT GGTCATCGCC
CACCGACTCT CGACCATCGA GCATGCCGAC CGCGTGGTGG TGATGGAGCG CGGCCGCATT
GCCGAGCAGG GAACGCATGC CGAGCTGCTG GAGCGGGACG GCCTGTACGC CCGATTGAGC
AGGAATCACA CAACCTGA
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| Protein sequence | MQAPSSPPPA PAPSAAPAAL DLASTLTLSQ RLKRLSPYFG GQRLAWTLAV AATLVGAVTE
PLIPALLQPL LDSGFTDGTL PLWSVPLAII GVFLVRGLSQ FVGQYALARI ANEGMLALRK
RLFERLLAAD MALFSRQSAS SLSNTVVYEV QTGSTLLVQA MLGISRDGFT LVALLGYLLY
LNWQLTLVVA AVVPGVAWIM KTLSRRLYRI TKISQEATDS LAYVVEENVL AHRMVRLHGA
QQGQQKRFGG LSGQLRKLAI KATIASAAMT PLTQLLAAAA LSAVICIALW QSRGTGAAAA
NVQDVTVGSF AAFITAMLML IAPIRRLADV ANPITRGVAA LERGLHLLEG SGDETGGTQV
PGKARGEIEL RDVSVQFGED KAPALSHVDL RVRPGEVVAL VGPSGAGKTT LVNLLPRFLQ
PTGGQLLLDG TPLPEWDLAA LRQQFAMVSQ DVVMFNDTIA ANVALGGVED EAQLWAALDA
ANLGTHVRGL SNGLHTVVGH NASQLSGGQR QRLAIARALY KDAPILILDE ATSALDNESE
RLVQEALTRL MQGRTTLVIA HRLSTIEHAD RVVVMERGRI AEQGTHAELL ERDGLYARLS
RNHTT
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