| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3374 |
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| Symbol | |
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| ID | 5748959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3707541 |
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| End bp | 3709901 |
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| Gene Length | 2361 bp |
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| Protein Length | 786 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641298478 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001564397 |
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| Protein GI | 160898815 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAA TCATTGGCCA AATCGCCGCA GAACTGAATG TCAAGCCGCA GCAAGTGGGT
GCTGCGGTCG AATTGCTTGA TGGCGGAGCC ACGGTTCCGT TCGTCGCCCG CTACCGCAAG
GAAGTGACCG GCGGCCTGGA CGACGCGCAA TTGCGCCAGC TCGACGAACG CCTGGGCTAT
CTGCGCGAGC TGGAAGACCG CCGGGGCACG GTGCTCAAGG CCATCGACGA GCAGGGCAAG
CTGACCGATG CGCTGCGCCT GGCCATTGCC AATGCGCCGA CCAAGCAGGA GCTGGAGGAC
ATCTACCTGC CCTTCAAGCA AAAGCGCCGC ACCAAGGGCC AGATTGCCAA GGAATTCGGC
ATCGAGCCGC TGGCCGACAA GCTGTTTGCC GACCCCACGC TGGACCCGCA CAAGGAGGCC
GAGGCCTTCT GCAAGCCCGC CACCACCCTG GACGACGGCA AGCCGGGCCC CGATTTCTCC
ACCACCTTCG CCGTGCTCGA TGGCGTGCGC GACATCCTGT CCGAGCGCTG GGCCGAAGAC
CCGGCGCTGG TGCAGAAGCT GCGCGAATGG CTGTGGGAAG ACGGCCTGCT GCGCTCCAAG
AAGATCGAGT CCAAGAACGA GAACGACCCC GAGGTCGCCA AGTTCCGCGA CTATTTCGAG
TACGACGAAC CGATTGGCCG CGTGCCCTCG CACCGCGCGC TGGCCGTGTT CCGCGGCCGC
GCGCTGGAGA TCCTCGAAGC CAAGCTGGTT CTTCCCGTGG AGCCCGAGCC CGGCCAGCCC
AGCCTGGCCG AAGGCAAGAT CGCACTGCAC CTGGGCTGGA GCCACGCCAA GCGCGCCAGC
GACGATCTGA TCCGCAAGTG CGTGGCCTGG ACCTGGCGCG TCAAGCTGAG CCTGTCCACC
GAGCGCGACC TGTTCTCGCG CCTGCGTGAA GACGCCGAGA AGGTGGCCAT CAAGGTCTTT
GGCGACAACC TGCGCGACCT GCTGCTGGCC GCGCCTGCGG GCCAGCGCGC CGTCATCGGC
CTGGACCCGG GCATCCGCAC GGGCGTCAAG GTGGCCGTGG TGGACAGCAC GGGCAAGCTG
GTGGACACCA CCACCATCTA CCCGCATGAG CCGCGCCGCG ACTGGGACGG CTCCCTGGCC
GTGCTGGCCC GCCTGGTCGA AAAGCACCAG ATCAACCTGA TTGCCATCGG CAACGGCACG
GCCAGCCGCG AGACGGACAA GCTGGCGGCC GACCTGATCA AGATCGCCAG CAAGGCCGAC
CGCCAGATCG AGAAGGTCGT GGTCAGCGAG GCCGGCGCTT CCGTGTATTC CGCCAGCGAG
TTCGCCTCGC AGGAAATGCC CGATGTGGAC GTGAGCCTGC GCGGCGCCGC CAGCATTGCG
CGCCGCCTGC AGGACCCGCT GGCCGAGCTG GTCAAGATCG ACCCCAAGAG CATCGGCGTG
GGCCAGTACC AGCACGACGT GAACCAAAGC GAGCTGGCGC GCCAGCTCGA CGCCGTGGTC
GAGGACTGCG TGAACTCCGT GGGCGTGGAC CTGAACACGG CCTCGGCGCC GCTGCTGTCG
CGCGTCTCGG GCCTGTCGGG CAGCGTGGCC AAGTCGGTGG TGCGCTGGCG CGATGCCAAC
GGCTCCTTCA AGAGCCGCAA GCAGCTGATG GAGGTGGCCG GCCTGGGCGC CAAGACCTTC
GAGCAGTCCG CAGGCTTTCT GCGCATCCGC GGCGGGGACA ACCCGCTGGA CATGACGGGC
GTGCACCCGG AAACCTATCC CGTGGTCGAA CGCATCATTG CCACCACGGG CAAGAGCGTG
GACCAGCTCA TGGGCCGCTC CGAGGTGCTC AAGGGCCTGA AGGCCGAGCA GTTCGTGAGC
GAGCAGTTCG GTGCCATCAC CATCAAGGAC ATCCTGGGCG AGCTGGAAAA GCCCGGCCGC
GACCCGCGCC CGGACTTCGT CGTCGCCCGC TTCAATGACG GCGTGGAAGA CATCAAGGAC
CTCAAGGAAG GCATGACGCT GGAGGGCACG GTCAGCAACG TGGCCCAGTT CGGCGCCTTC
GTGGACCTGG GCGTGCACCA GGACGGCCTG GTCCACGTCA GCCAGATGAG CCACAAGTTC
ATCGAGGACG CGCGCGAGGT CGTCAAGACC GGCCAGATCG TCAAGGTCAA GGTGCTGGAG
GTCGATGTGG CGCGCAAGCG CATCAGCCTG ACCATGAAGC TGGATGCGGC GCCCGCGCGC
CGCGATGGCC CCCGTGACAA CCGCTTCGAG AGCGCAGGCC GGGGCAGCCA GGGCCATCAG
GGCGGCCAGC GCCGCGCGCC CGAGCCGGCG CAGCAGTCGG CCATGGCCTC GGCCTTCGCC
AAGCTGCAGA CCCGCAAGTA A
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| Protein sequence | MQKIIGQIAA ELNVKPQQVG AAVELLDGGA TVPFVARYRK EVTGGLDDAQ LRQLDERLGY
LRELEDRRGT VLKAIDEQGK LTDALRLAIA NAPTKQELED IYLPFKQKRR TKGQIAKEFG
IEPLADKLFA DPTLDPHKEA EAFCKPATTL DDGKPGPDFS TTFAVLDGVR DILSERWAED
PALVQKLREW LWEDGLLRSK KIESKNENDP EVAKFRDYFE YDEPIGRVPS HRALAVFRGR
ALEILEAKLV LPVEPEPGQP SLAEGKIALH LGWSHAKRAS DDLIRKCVAW TWRVKLSLST
ERDLFSRLRE DAEKVAIKVF GDNLRDLLLA APAGQRAVIG LDPGIRTGVK VAVVDSTGKL
VDTTTIYPHE PRRDWDGSLA VLARLVEKHQ INLIAIGNGT ASRETDKLAA DLIKIASKAD
RQIEKVVVSE AGASVYSASE FASQEMPDVD VSLRGAASIA RRLQDPLAEL VKIDPKSIGV
GQYQHDVNQS ELARQLDAVV EDCVNSVGVD LNTASAPLLS RVSGLSGSVA KSVVRWRDAN
GSFKSRKQLM EVAGLGAKTF EQSAGFLRIR GGDNPLDMTG VHPETYPVVE RIIATTGKSV
DQLMGRSEVL KGLKAEQFVS EQFGAITIKD ILGELEKPGR DPRPDFVVAR FNDGVEDIKD
LKEGMTLEGT VSNVAQFGAF VDLGVHQDGL VHVSQMSHKF IEDAREVVKT GQIVKVKVLE
VDVARKRISL TMKLDAAPAR RDGPRDNRFE SAGRGSQGHQ GGQRRAPEPA QQSAMASAFA
KLQTRK
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