| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3369 |
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| Symbol | |
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| ID | 5748954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3701230 |
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| End bp | 3702699 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641298473 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001564392 |
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| Protein GI | 160898810 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.413443 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCGCC CAACGAATGT CTCCGCACTG GCCGCAGCGG CGGCGCTGGC GGCGCTGCTG
ACCGGCTGCA ACCTCGCGCC GCAGCACCGC ACGCCCGACA TGCCCGTGCC CGATACCGTG
GGCAGCACGG CCGCAATGCC GGCCCAGGCC GACGAGGCCA GCCTGCAGGC CGCCGCCGCG
CTGGGCTGGG TGCAGTCCCA GCAGCTGCGC GAGGTCATTG CGCTGGCCCT GGCCAACAAC
CGCGATCTGC GCGTGGCCGT GGAAAGCATC GAACGCGCGC GTGCCCAGTA CGGCATCACG
CGCGCCGACC TGCTGCCCAG CGTCAACGCC CAGGCCCAGG CCAGCCGTGC GCGCACGGCC
GCCGGCATGA CCAGCGCCAC CCAGGCGGCC TCGGTCAGCA CCCAGTACAC GGCCCAGCTG
GGCTTTGCCA GCTATGAGAT CGACCTGTGG GGCCGCGTGC GCAACCTCAG CGAGGCGGCG
CTGCAGCAGT TCCTGCAAAG CGAGCAGAAC CGGCGCAATG TGCAGATCGG CCTGGTGGCC
GACGTGGCCA ACGGCTGGCT CACGCTGGCG GCCGACCAGG CCCGCCTGCA GCTGGCGCGC
GAGACCCTGG CCAGCCGTGA GAAAGCCTAT GAGCTGACGC GGCGCATGCA CGAGATTGGC
TCCACATCGG GCCTGGTGCT GGCCCAGAAC CAGACCACGG TGGACACGGC GCGCGGCGAC
GTGGCCAGCT TCACCTCCCA GGTGGAGCGT GACCGCAATG CCCTGCAATT GCTGGTGGGC
GGCCCGCTGC CCGATGCCCT GCTGCCCGGC GCCGCCACGC TGCGCGCCGA TGCCCGGCCC
GCGGCCGCGC TGCAGCCCGT GCCGGCGCCC TTGCCCTCCA GCGTGCTGCT GGTGCGCCCC
GACATCCAGG CCGCCGAGAA CAACCTGCGC GCCATGGAGG CCAACATCGG CGCCGCACGC
GCTGCCATGT TCCCCACCAT CAGCCTCACG GCCAGCGTGG GCTCGGGCAG CCGCGAGCTC
GATGGCCTCT TTGGCGGCAG CAGCAGCACC TGGAGCTTCA TCCCCCTGGT GCGCCTGCCC
ATCTTCGACG GTGGCCGCAA CCGTGCGGGC GTGCAGGTGG CCGAGGCCAA CCAGCGCATC
GCCATCGCCC AGTACGAGAA GGCCGTACAG ACGGCCTTCC GCGAAACCGC CGACGTGCTG
GCCGACCGCG CGCAGTGGGA CGAGCGCCTG GCCGCCCAGA CCAGCATGGT CGCCGCCACG
CAAAAGGCCT TCGACCTGTC GGAGGCCCGC TTCAAGGCCG GCGTGGACAA CTACCTGACC
GTGCTGGATG CGCAGCGCAG CCTCTACACG GCCCAGCAGA CCCTGATCGG ACTGCGCCTG
TCCGAGCAGC TCAACCGCGT CACGCTGTGG AAGGTGCTGG GCGGCGAGCA GGTGCAGGCG
TCGTCCGCCT CGGCACCGGC GAATTCCTGA
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| Protein sequence | MRRPTNVSAL AAAAALAALL TGCNLAPQHR TPDMPVPDTV GSTAAMPAQA DEASLQAAAA
LGWVQSQQLR EVIALALANN RDLRVAVESI ERARAQYGIT RADLLPSVNA QAQASRARTA
AGMTSATQAA SVSTQYTAQL GFASYEIDLW GRVRNLSEAA LQQFLQSEQN RRNVQIGLVA
DVANGWLTLA ADQARLQLAR ETLASREKAY ELTRRMHEIG STSGLVLAQN QTTVDTARGD
VASFTSQVER DRNALQLLVG GPLPDALLPG AATLRADARP AAALQPVPAP LPSSVLLVRP
DIQAAENNLR AMEANIGAAR AAMFPTISLT ASVGSGSREL DGLFGGSSST WSFIPLVRLP
IFDGGRNRAG VQVAEANQRI AIAQYEKAVQ TAFRETADVL ADRAQWDERL AAQTSMVAAT
QKAFDLSEAR FKAGVDNYLT VLDAQRSLYT AQQTLIGLRL SEQLNRVTLW KVLGGEQVQA
SSASAPANS
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