| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3338 |
|---|
| Symbol | |
|---|
| ID | 5748923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3662178 |
|---|
| End bp | 3663062 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641298442 |
|---|
| Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
|---|
| Protein accession | YP_001564361 |
|---|
| Protein GI | 160898779 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.368816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACA TTCCTGCGCG CCGCTCGGCG CTGCGCCAGG CGGCTGCCTG CGTGCTGGCC
GCCTCCACCC TGTCCAGCCT GCCTGCGCTG GCCGCCGAAC CCGCCGTGCT GCGCGTCTCG
GCCATCCCGG ATGAAGCTCC CACCGAGCTG CAGCGCAAGT TCGAGCCGCT GGGCAAGTAC
CTCTCGGCCC AGACCGGCAT GAAAGTGGTG TTCACGCCCG TGACCGACTA CGCCGCCGTG
GTCGAGTCGC TGGCCACGCG CAAGCTGGAC CTGGCATGGC TGGGCGGCTT CACCTTCGTG
CAGGCCAAGA TCCGCACCAA CGGCACGGCC ATCCCCATCG TGCAGCGTGA GGAAGACGCC
AAGTTCACCT CCAAGTTCAT CACGGCCAAC CCCGCCATCA AGACCCTGGC CGACCTCAAG
GGCAAGAGCT TCGCCTTTGG CGCGCCCTCG TCCACCTCGG GCAGCCTGAT GCCGCGCTTT
TTCCTGCAGC AGGACGGCAT CAACCCCGAG AAGGACTTCA AGACCGTGGC CTTCTCCGGC
GCGCATGACG CCACCGTGGC CTTCGTGGCC GCAGGCAAGG CCGAGGCCGG CGTGCTCAAC
GCCTCGGTCT GGGACAAGCT GGTGGAGACC AAGAAGGTCG ATACCAGCAA GGTGCGCGTG
TTCGCCACCA CGCCGCCCTA CTTCGACTAC AACTGGACCG TGCGCGGCGA CCTGGACCCG
GCCCTGGTCA AGAAGCTGAC CGACGCCTTC CTGGCGCTGG ACCCGGCCAA GCCCGAGCAC
AAGGCCATCC TGGAGCTGCA GCGCGCCGCG CGCTTCGTGC CCACCCAGGC CTCGAACTAC
GAAGGCATCG AGGCTGCCGC CAAGTCGGCC GGCCTGCTCA AGTAA
|
|---|
| Protein sequence | MNHIPARRSA LRQAAACVLA ASTLSSLPAL AAEPAVLRVS AIPDEAPTEL QRKFEPLGKY
LSAQTGMKVV FTPVTDYAAV VESLATRKLD LAWLGGFTFV QAKIRTNGTA IPIVQREEDA
KFTSKFITAN PAIKTLADLK GKSFAFGAPS STSGSLMPRF FLQQDGINPE KDFKTVAFSG
AHDATVAFVA AGKAEAGVLN ASVWDKLVET KKVDTSKVRV FATTPPYFDY NWTVRGDLDP
ALVKKLTDAF LALDPAKPEH KAILELQRAA RFVPTQASNY EGIEAAAKSA GLLK
|
|---|
| |