Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3327 |
Symbol | |
ID | 5748912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 3649462 |
End bp | 3651876 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641298431 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001564350 |
Protein GI | 160898768 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.218834 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCTC CCAAGTCCTC CCGATTCCGA TTCCGCCTCC GTCTCCGCCG CACAGCGGTT TTTCATGCAT GTGCAGGCCT GGTGCTGGGC CTGCAACTGC AGTTGGCCGC CGCGCAATCG GTGTCCTTCG ACGTGCCGGC CCAGCCGCTG GCCCAGGCGC TGAGCCAGTT TGCGCGCCAG GCGGGGCTGC AGCTCACCTA CTCCTCCGAA CTGGTGCAGG GCCGGCAGGC CCCGGCGCTC AACGGCAGCC ACGATGTGCG CCAGGGCCTG GCGGCATTGC TTCAGGGCAG CGGCCTGCAG GGGCGCATCG AGGGCGGTAC GCTGACCCTG CTTCCCACTG CCGCCAACGC GCCTGAGAAC GCGCACCGCC TGTCCGAGAT CACCGTCACG GCCGGCGACC AGTATGTGAG CCTGCTGCCC GCGCCCTACG CCGGCGGGCA GGTGGCCAAG GGCGTGCGCC TGGGCGTGCT GGGCAATACC GGCAACATGC AGGCGCCGTT CAGCACCACC AGCTACACGT CCGAGGCCGT GCGCAACCAG CAGGCCGGCA CCATTGCCGA GGCGGTGAAC CGCGACCCTT CCGTGCGCTA CACCGTGCTG CCGGGCGGCA ACGTGGACAA CCTCTATATC CGGGGCTTTC CGATCTGGGA GGGCAACTCG GGCGAGATCG CCTTTGACGG CATCTACGGC ATTGCTCCCA ACTACCGCGT GCGCACCGAG TACGTGGACC GCATCGAGGT GGTCAAGGGG CCCGGCGCGC TGCTGTTCGG CATGTCGCCC AATGGCTCGG TGGGCGGGGT GATCAACATC GCGCCCAAGC GTGCCAATGA AGACGTGGCG CGGCTGACCA CGGGCTGGAC TTCGGACAGC CTCTGGCGTG CCCATGCCGA CGTGGGCCGG CGCTTCGGCG ACGAGGCCCA GTACGGCATC CGTGTGAACG CCAGCAAGTA CGGCGGCGAT ACGTCCATGG ACCATCAAAG CACCGACGGC CATGTGCTGG CCGTGGCGCT GGACTACGAG GTGGAGCGCT TCCGTGCCAC GCTGGACCTG CTCTCGCAGG ACGAGCGCAT CGACGGCGTG GGCCGGCCCA TCATGCCTAC GGGACTCACC TCCATGCCTG CTGCGCCCGA TGGCCGGCGC AACGTGACCC AGCCCTGGGA ATGGTCCAAG AACCGCGAGC GCGCCGTGCT GCTGCGCACC GAACTGGACC TCACGCAGCA GCTCACGCTG TTCGCCAACA TCGGCCAGTC GCGCGCCGAT GTGGACCGCA TCTACGACTC GGCCCCGCGC CTGACCAGTG CGGCGGGCGC CACCAGCATC ACGCCCACCT ACGCGGTGTT CGACGTGGAC CGCAGCACCA TCGACGCGGG CCTGCGCTCG CGCTTTGCGC TGGCCGGTGT CAAGCATTCG GTCACGCTGC AGCTGGCCAG CTACCGCGAG GATTTTCACC GCGCGCTGCA GGCGGGCTCC ACCGTGGTGT CCAACATCTA TGCGCCCATT GCCCACGCGC CGCAGAGCAT TGCGCGGCCT TCGGTCATTC CGCGCATCCA TGACAACCGC AACACCAGCC TGGCGCTGGT GGACACGCTC TCGCTGCTGC AGGACCGGCT GCAACTGTCG CTGGGCCTGC GCCACCAGGC CATCAAGTCC ACCAACTACA ACGTGCTCAC GGGCGGCACC GCCAATGTCT ACGACGAGAG CGTGACCACG CCCGCCGTGG GGGTGGTCTG GCGCCAGGCG CCCAACTGGA GCCTCTACGC CAACTACATC GAAGGCCTGA GCAAGGGCGA CATCGCGCCG CCCGCGGCCA GCAACTACGG CGAGGTGCTG CGTCCCTACA AGAGCCGCCA GTACGAAGTG GGCAGCAAGT ACGACTTCGG CAGCTTCATG GCCACGGCCG CCCTGTTCAG CATTGAAAAA CCCAGCGGCG GCCTGGACCA GGGCGTCTAC AAGACCAATG GCGAGCAGCG CAACCTGGGC ATGGAGCTGT ATGCCTACGG CGAGGCCGCG CGCGGCCTGC GCCTGCTCGG TGGCGTGACC TGGCTCAAGC CCGAGATCAC GCGCTCGGCC ACGCCTGCGC TGGTGGGCAA CCGGCCCATC GGCACCTCGC GCCTGCTGGC CAACCTGGGC GTGGAATGGG ATGTGCCCGC CCTTGAGGGC CTGACCCTGG TCGGCGACCT GGCATACACC GGCGCCCAGT TCGTGGACCA GGCCAACCGC CTGCGCATCC CGGGCTGGAC ACGCACCGAC CTGGGCCTGC GTTATGCCAC CCGCATCGCG GGCCGCAAGA CCACGCTGCG CGCCACGGTG CAGAACGTGG CCGACCGCAA GGCCTGGGCC GGTGTCACGT CCTGGGGCGC CGTCTCGCCG ATGATTCCGC GCACCTTCGT GGTATCGGCT TCGGTGGATT TCTGA
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Protein sequence | MSAPKSSRFR FRLRLRRTAV FHACAGLVLG LQLQLAAAQS VSFDVPAQPL AQALSQFARQ AGLQLTYSSE LVQGRQAPAL NGSHDVRQGL AALLQGSGLQ GRIEGGTLTL LPTAANAPEN AHRLSEITVT AGDQYVSLLP APYAGGQVAK GVRLGVLGNT GNMQAPFSTT SYTSEAVRNQ QAGTIAEAVN RDPSVRYTVL PGGNVDNLYI RGFPIWEGNS GEIAFDGIYG IAPNYRVRTE YVDRIEVVKG PGALLFGMSP NGSVGGVINI APKRANEDVA RLTTGWTSDS LWRAHADVGR RFGDEAQYGI RVNASKYGGD TSMDHQSTDG HVLAVALDYE VERFRATLDL LSQDERIDGV GRPIMPTGLT SMPAAPDGRR NVTQPWEWSK NRERAVLLRT ELDLTQQLTL FANIGQSRAD VDRIYDSAPR LTSAAGATSI TPTYAVFDVD RSTIDAGLRS RFALAGVKHS VTLQLASYRE DFHRALQAGS TVVSNIYAPI AHAPQSIARP SVIPRIHDNR NTSLALVDTL SLLQDRLQLS LGLRHQAIKS TNYNVLTGGT ANVYDESVTT PAVGVVWRQA PNWSLYANYI EGLSKGDIAP PAASNYGEVL RPYKSRQYEV GSKYDFGSFM ATAALFSIEK PSGGLDQGVY KTNGEQRNLG MELYAYGEAA RGLRLLGGVT WLKPEITRSA TPALVGNRPI GTSRLLANLG VEWDVPALEG LTLVGDLAYT GAQFVDQANR LRIPGWTRTD LGLRYATRIA GRKTTLRATV QNVADRKAWA GVTSWGAVSP MIPRTFVVSA SVDF
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