| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3313 |
|---|
| Symbol | |
|---|
| ID | 5748898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3633581 |
|---|
| End bp | 3635692 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641298417 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001564336 |
|---|
| Protein GI | 160898754 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0437613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00999923 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTG AATACAAAGT GGACGGTGCC ATCGCCGTCA TCACCTTGAA CAATCCGCCG
GTCAACGGCC TGGGGCTATC CACGCGGCGG GGCATCGTCG AGGGGCTGGA CAAGGCCTAT
TCCGACCCTG CCGTCAAGGC CATCGTCATC ACGGGCGCCG GCAAGGCCTT CTCGGGCGGC
GCTGACATCA ACGAGTTCGG CAAGGAAGAG GCGTATCGCG AGCCGCACCT GGTCTCGCTG
ATCAACTCGC TGGACCAGGG CAGCAAGCCC GTGGTGGCCG CCATCCATAC CGTCTGCATG
GGCGGCGGGC TGGAGCTGGC GCTGGGCTGC AACTACCGCG TGGCCGCTCC CGGCACCCTG
GTGGCCCTGC CGGAAGTCAA GCTGGGCCTG CTGCCCGGTG CAGGCGGCAC GCAGCGCCTG
CCGCGCGTGC TGGGCGTGGA GACCGCGCTG AACATGATCG TCAGCGGCGA ACCCGTCAAG
AGCGAGCTGC TGGCCTCCAT CCCCGGCCAG AAGCTGTTCG ACAAGATGGC CGCTTCGCCC
GAGTCCCTGC TGGACGAGGC CAAGGCCTTT GCGCTGGAAG TGGCTGACAA GCACGCGGCT
GGTGGTCCGC TGCCGCGCGT GCGCGACCTG CCTTGCAAGC ACCCCCAGGG CGACGCCTAC
TTCCAGTTCG CGCGCAACAT GGTCAAGGGC ATGGCCAAGA ACTACCCGGC CCCGGCCCGC
TGCGTGGACA CGGTGGAGAA CGCCGCGCGC AAGAAGTTCG ACGAGGGCAT GGCCCTGGAG
CGCGATGCCT TCATGCAACT GATGTGGTCG CCCGAGTCGC GCGCGCTGCG CCACCTGTTC
ATGGCCGAGC GCGCGGCCTC CAAGATCGCC GACGTGCCTT CGGACACGGC TGTGCGCGAC
ATCAAGACCG TGGGCGTCAT CGGTGCCGGC ACCATGGGCG GCGGCATCTC CATGAACTTC
CTGAACGCGG GCATTCCCGT CACCATTCTG GAGACCAAGC AGGAAGCGCT GGACCGTGGC
GTGGCCACCA TCCGCAAGAA CTACGAAGCC CAGGTCAAGA AGGGCAAGCT CACCCAGGAA
AAGTACGACC AGCGCATGGC GCTGCTGAGC ACCACGCTGT CGTATGACGC GCTCAAGAAT
GCCGACCTCA TCATCGAGGC GGTGTTCGAG GAGCTGGGCG TCAAGGAAAC CGTGTTCAAG
CAGCTGGACG AGGTTGCCAA GCCCGGCGCC ATCCTGGCCT CCAACACCTC CACGCTGGAC
GTGGACAAGA TCGCCGCCTT CACCAAGCGC CCGCAGGACG TGGTGGGCAT GCACTTCTTC
AGCCCCGCCA ACGTGATGAA GCTGCTGGAA GTGGTGCGCG GCAAGCACAC CGCCAAGGAC
GTGCTGGCCA CCGTGATGAA GCTGGCCAAG AAGATCAAGA AGACCGCCGT GGTCTCGGGC
GTGTGCGATG GCTTCATCGG CAACCGCATG ATCGAGCAGT ACTCGCGCCA GGCCGGCTTC
CTGCTGGACG AAGGCGCCAC GCCCGCCCAG GTGGACAAGG CCATCGAGAA GTTCGGCTTC
GCCATGGGCC CGTTCCGCAT GGGCGATCTG GCCGGCAACG ACATCGGCTG GGCCATCCGC
AAGCGCCGCG CCGTCGAGCG CGCCGACATG AAGTACAGCC GCACGGCCGA CAAGCTGTGC
GAGCTGGGCC GCTTCGGCCA GAAGACCGGC GCGGGCTGGT ACGACTACCA GGCGGGCAAG
CGCGATGCCA TCCCGTCCGA GCTGGTCAAC CAGATGATCG AGTCCCACCG CAAGGAGCTG
GGCATCACCC CGCGCAAGAT CTCCGATGAG GAAATCGTCC AGCGCCTGGT CTTCGCCCTG
GTCAACGAAG GCGCCCACAT CCTGGAAGAC GGCATCGCCG GCAAGTCGGG CGATATCGAC
ATGGTCTACC TGACCGGCTA TGGCTTCCCC ATCTGGCGCG GCGGCCCCAT GCACTACGCG
GGTGAGGTCG GGCTGTTCAA CGTGGTCCAG GCCATGAACC GCTTCGCCAA GAACCCCAAC
GACGACGCCG ATTTCTGGCA GCCGGCCCCG CTGCTGGCGA AGCTGGCGGC CGAAGGCAAG
CAATTCAGCT GA
|
|---|
| Protein sequence | MTAEYKVDGA IAVITLNNPP VNGLGLSTRR GIVEGLDKAY SDPAVKAIVI TGAGKAFSGG
ADINEFGKEE AYREPHLVSL INSLDQGSKP VVAAIHTVCM GGGLELALGC NYRVAAPGTL
VALPEVKLGL LPGAGGTQRL PRVLGVETAL NMIVSGEPVK SELLASIPGQ KLFDKMAASP
ESLLDEAKAF ALEVADKHAA GGPLPRVRDL PCKHPQGDAY FQFARNMVKG MAKNYPAPAR
CVDTVENAAR KKFDEGMALE RDAFMQLMWS PESRALRHLF MAERAASKIA DVPSDTAVRD
IKTVGVIGAG TMGGGISMNF LNAGIPVTIL ETKQEALDRG VATIRKNYEA QVKKGKLTQE
KYDQRMALLS TTLSYDALKN ADLIIEAVFE ELGVKETVFK QLDEVAKPGA ILASNTSTLD
VDKIAAFTKR PQDVVGMHFF SPANVMKLLE VVRGKHTAKD VLATVMKLAK KIKKTAVVSG
VCDGFIGNRM IEQYSRQAGF LLDEGATPAQ VDKAIEKFGF AMGPFRMGDL AGNDIGWAIR
KRRAVERADM KYSRTADKLC ELGRFGQKTG AGWYDYQAGK RDAIPSELVN QMIESHRKEL
GITPRKISDE EIVQRLVFAL VNEGAHILED GIAGKSGDID MVYLTGYGFP IWRGGPMHYA
GEVGLFNVVQ AMNRFAKNPN DDADFWQPAP LLAKLAAEGK QFS
|
|---|
| |