| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3310 |
|---|
| Symbol | |
|---|
| ID | 5748895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3630529 |
|---|
| End bp | 3631893 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641298414 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001564333 |
|---|
| Protein GI | 160898751 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0932406 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.021749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCGA TCACCAAAAC GACCATGACA TCCACTGCCG CAAAAGGCGT TCCGGACGCT
TCAGGGGCTG GGGGCGCAGG GCGCCACTAC AGCTTCCAGC CGCTCAACAT CGGCCGCATC
CTGATCTGGG GCGCCTTCGC CCTGGCGCTG ATCGTCGCGC CGCTGGTGTT CACCAGCAGC
CTGGCGCTGA CCATGCTCAG CCAGATCGGC TATCTCATCA TCATCTGCCT GTCCTACAAC
ATCCTGCTGG GGCAGGGCGG CATGCTGAGC TTCGGCCATG CGGTCTACAC GGGGCTGGGC
TCGTTCATCG CCATCCATGC GATGAACCGG GCCAGCTCCG GCGACTGGGG CATTCCGCTG
GTGCTGATTC CCATCATCGG CGGCCTGGGC GGCATGTTCT TCGCGGCCCT GCTGGGCTAT
GTGACCACCA AGAAGTCGGG CACCACCTTC GCCATGATCA CCATGGGCAT CGGAGAGCTG
GTGGCGTCCA TGGCGCTGAT GTTCCCCGAG TTCTTCGGGG GCGAGGGCGG CATCACCACC
GACCGCGTCT ATGGCAAGCC CTTCTTCGGG CTGACCTTCG GCTCGGGCAT GGAGGTGTAC
TACCTGATCG CCGCCTACTG CTTCATCTGC ACGGCCGCCA TGTTCGCCTT CACGGGCACG
CCTCTGGGCC GCATGCTCAA CGCCGTGCGC GACAACCCCG AGCGCGTGGA GTTCGTGGGC
TACAACACGC AGCGCGTGCG CTACTTCTCC TTCATCATCG CGGGCTTCTT CGCTGGCGTG
GGCGGGGGGC TTGCAGCCAT CAACTTCGAG ATCATCACGG CCATGGACAG CGTGAGCGTC
ATGCGCTCGG GCTCGTACCT GCTGTTCACC TTCCTGGGCG GCGCCACCTT CTTCTTCGGA
CCCATCATCG GCGCCGTGCT GCTGGTGCTG GCCTCGGTGC TGCTGTCGGA GCTGACCAAG
GCCTGGCTGC TGTACCTGGG CCTGGTGTTC CTGCTGATGG TGATGTACGC ACCGGGCGGC
GTTGCCAGCC TGATCATGAT GAACCTGCGC GTGGCGCGCT TCGGCAAGTG GCGCCGGCTG
GCCCAGCCCT ACCTGGCCAT CGCGGCCAGT GCCCTGGTCA TGATCGTGGG CGGCGCGGCC
ATCGTCGAGA TGATCTACCA CCTGCAGCTC AATGCGGCCC TGGGTCCCCA GGTCTCGTTC
ATGGGCGTGC AGCTCGATAC CAGCTCGGCA TCGACCTGGA CCGTGGCCGT TGCCATCTTC
GTGGTGGGCC TGGGCCTGCT GGAAGTGGCC AGGCGCTGGT GCCTGCGCCG CTGGGAGCGC
ATCCAGGAAG AAATCGAAGA AGCCATCAAG CGCGGGGAGG GTTGA
|
|---|
| Protein sequence | MSSITKTTMT STAAKGVPDA SGAGGAGRHY SFQPLNIGRI LIWGAFALAL IVAPLVFTSS
LALTMLSQIG YLIIICLSYN ILLGQGGMLS FGHAVYTGLG SFIAIHAMNR ASSGDWGIPL
VLIPIIGGLG GMFFAALLGY VTTKKSGTTF AMITMGIGEL VASMALMFPE FFGGEGGITT
DRVYGKPFFG LTFGSGMEVY YLIAAYCFIC TAAMFAFTGT PLGRMLNAVR DNPERVEFVG
YNTQRVRYFS FIIAGFFAGV GGGLAAINFE IITAMDSVSV MRSGSYLLFT FLGGATFFFG
PIIGAVLLVL ASVLLSELTK AWLLYLGLVF LLMVMYAPGG VASLIMMNLR VARFGKWRRL
AQPYLAIAAS ALVMIVGGAA IVEMIYHLQL NAALGPQVSF MGVQLDTSSA STWTVAVAIF
VVGLGLLEVA RRWCLRRWER IQEEIEEAIK RGEG
|
|---|
| |