Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3307 |
Symbol | |
ID | 5748892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 3626806 |
End bp | 3628041 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641298411 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001564330 |
Protein GI | 160898748 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0131361 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGTTTG CGATCAAGGC ATTGACGGCA TCCCTGGCCC TGGCTTGCGC CACGGGCGCC ATGGCCCAGA AGGGCGAGAC GGTGAAGGTT GCGTGGATCG ACCCGCTGTC CGGCCTCATG GCCGCGCTGG GGTCCAACCA GCTCAAGAGC CTGCAGTACA TCGCCGAGGA GCTCAACAAG GGCACGGCCT CGGGCGTGAA GTTCGAAATC ATCGGCATCG ACAACAAGCT CAGCCCGCAG GAAACCACGG CGGCCCTGCG CTCGGCCATG GACCAGGGCG TGCGCTACGT TTTCCAGGGC AATGGCTCGG GCCCGGCCCT GGCCATCATG GATGCGCTGG AAAAGCACAA CGCGCGCAAC AAGGGTAAGG AGGTCGTCTA CCTCAACTAT GCGGCCGTGG ACCCGGACCT GACCAACAGC AAGTGCAGCT ACTGGCATTT CCGCCTGGAT GCGGACACCT CCATGAAGAT GGAAGCGCTG ACGACCTATA TGAAGGACCT GCCCGAGGTC AAGAAGGTCT ACCTGATCAA CCAGAACTAC TCGCACGGCC AGCAGGTCTC CAAGTACGCC AAGGAGATGC TCAAGCGCAA GCGCCCCGAT GTGGAGATCG TGGGCGACGA CTTCTCGCCG CTGGCCCAGG TACGCGACTT CGCACCCTAC ATCGCCAAGA TCAAGCAGTC GGGTGCCGAC TCGGTGATCA CGGGCAACTG GGGCTCGGAC CTGGCGCTGC TGATCAAGGC CGCCAGCGAC GCGGGCCTGA ACAACGTCAA GTTCTACACC TACTACGCCA TCGCCACCGG CGCGCCCACG GCCATGGGCG CAGCTGCGGC CGACAAGGTC TACATGGTGG GCTACGGCCA CATGAACCTG CCCGGCCCAC TGGACCGCAT CACCAAGGGC TACAAGGCCA AGTTCAACGA CGACATGTAC ACGGGCTCGC TGTACTCGGG CCTGACCATG CTGGACCAGG CCTTCCTGCG CGCCAAGACC ACGGACCCGG CCAAGGTGGC GGCCACCATG GAAGGCATGA AGTTCAACAG CCTCAACGGC GAAGTGGAGA TGCGCAAGAG CGACCACCAG CTGCAGCAGG GCCTGTTCAT CTCGCGCTGG GAAAAGGCCG GCGGCAAGTA TCCGATGGAT TCGGAGAACA CCGGCTACAC CTTCGTTCCC GTGAAGTACT ACGAGCCCTA TGTGGCCAGC ACGCCGACTT CATGCGAGAT GAAAAGGCCC TCCTGA
|
Protein sequence | MKFAIKALTA SLALACATGA MAQKGETVKV AWIDPLSGLM AALGSNQLKS LQYIAEELNK GTASGVKFEI IGIDNKLSPQ ETTAALRSAM DQGVRYVFQG NGSGPALAIM DALEKHNARN KGKEVVYLNY AAVDPDLTNS KCSYWHFRLD ADTSMKMEAL TTYMKDLPEV KKVYLINQNY SHGQQVSKYA KEMLKRKRPD VEIVGDDFSP LAQVRDFAPY IAKIKQSGAD SVITGNWGSD LALLIKAASD AGLNNVKFYT YYAIATGAPT AMGAAAADKV YMVGYGHMNL PGPLDRITKG YKAKFNDDMY TGSLYSGLTM LDQAFLRAKT TDPAKVAATM EGMKFNSLNG EVEMRKSDHQ LQQGLFISRW EKAGGKYPMD SENTGYTFVP VKYYEPYVAS TPTSCEMKRP S
|
| |