Gene Daci_3307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3307 
Symbol 
ID5748892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3626806 
End bp3628041 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content63% 
IMG OID641298411 
Productextracellular ligand-binding receptor 
Protein accessionYP_001564330 
Protein GI160898748 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0131361 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTG CGATCAAGGC ATTGACGGCA TCCCTGGCCC TGGCTTGCGC CACGGGCGCC 
ATGGCCCAGA AGGGCGAGAC GGTGAAGGTT GCGTGGATCG ACCCGCTGTC CGGCCTCATG
GCCGCGCTGG GGTCCAACCA GCTCAAGAGC CTGCAGTACA TCGCCGAGGA GCTCAACAAG
GGCACGGCCT CGGGCGTGAA GTTCGAAATC ATCGGCATCG ACAACAAGCT CAGCCCGCAG
GAAACCACGG CGGCCCTGCG CTCGGCCATG GACCAGGGCG TGCGCTACGT TTTCCAGGGC
AATGGCTCGG GCCCGGCCCT GGCCATCATG GATGCGCTGG AAAAGCACAA CGCGCGCAAC
AAGGGTAAGG AGGTCGTCTA CCTCAACTAT GCGGCCGTGG ACCCGGACCT GACCAACAGC
AAGTGCAGCT ACTGGCATTT CCGCCTGGAT GCGGACACCT CCATGAAGAT GGAAGCGCTG
ACGACCTATA TGAAGGACCT GCCCGAGGTC AAGAAGGTCT ACCTGATCAA CCAGAACTAC
TCGCACGGCC AGCAGGTCTC CAAGTACGCC AAGGAGATGC TCAAGCGCAA GCGCCCCGAT
GTGGAGATCG TGGGCGACGA CTTCTCGCCG CTGGCCCAGG TACGCGACTT CGCACCCTAC
ATCGCCAAGA TCAAGCAGTC GGGTGCCGAC TCGGTGATCA CGGGCAACTG GGGCTCGGAC
CTGGCGCTGC TGATCAAGGC CGCCAGCGAC GCGGGCCTGA ACAACGTCAA GTTCTACACC
TACTACGCCA TCGCCACCGG CGCGCCCACG GCCATGGGCG CAGCTGCGGC CGACAAGGTC
TACATGGTGG GCTACGGCCA CATGAACCTG CCCGGCCCAC TGGACCGCAT CACCAAGGGC
TACAAGGCCA AGTTCAACGA CGACATGTAC ACGGGCTCGC TGTACTCGGG CCTGACCATG
CTGGACCAGG CCTTCCTGCG CGCCAAGACC ACGGACCCGG CCAAGGTGGC GGCCACCATG
GAAGGCATGA AGTTCAACAG CCTCAACGGC GAAGTGGAGA TGCGCAAGAG CGACCACCAG
CTGCAGCAGG GCCTGTTCAT CTCGCGCTGG GAAAAGGCCG GCGGCAAGTA TCCGATGGAT
TCGGAGAACA CCGGCTACAC CTTCGTTCCC GTGAAGTACT ACGAGCCCTA TGTGGCCAGC
ACGCCGACTT CATGCGAGAT GAAAAGGCCC TCCTGA
 
Protein sequence
MKFAIKALTA SLALACATGA MAQKGETVKV AWIDPLSGLM AALGSNQLKS LQYIAEELNK 
GTASGVKFEI IGIDNKLSPQ ETTAALRSAM DQGVRYVFQG NGSGPALAIM DALEKHNARN
KGKEVVYLNY AAVDPDLTNS KCSYWHFRLD ADTSMKMEAL TTYMKDLPEV KKVYLINQNY
SHGQQVSKYA KEMLKRKRPD VEIVGDDFSP LAQVRDFAPY IAKIKQSGAD SVITGNWGSD
LALLIKAASD AGLNNVKFYT YYAIATGAPT AMGAAAADKV YMVGYGHMNL PGPLDRITKG
YKAKFNDDMY TGSLYSGLTM LDQAFLRAKT TDPAKVAATM EGMKFNSLNG EVEMRKSDHQ
LQQGLFISRW EKAGGKYPMD SENTGYTFVP VKYYEPYVAS TPTSCEMKRP S