| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3284 |
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| Symbol | |
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| ID | 5748869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3598393 |
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| End bp | 3599847 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641298388 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001564307 |
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| Protein GI | 160898725 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.750948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.639167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGACA TGAACGACAA GACGATGCCG GCGCGCCTGG GCTGCATCGC CCTGGCCCTG
GCTGCGCTGG GCGGCTGCGC CGCGCAGCAG ACGATGCCGG ACAGGACAGC GCCTGCGCTG
GCCGCTTCGT GGAAGCAGCA GGGCGAAGCC GTCCCTGCCT CTGTTTCACC GCAGTGGTGG
CAGGCCTTTG GCAGTACGGA GCTGGGCGGC ATGGTGCAGG CCGCCCAGGA CCAGAGCCTG
GACATGGCTG CCGCCATGGC CCGCGTGCGC CAGGCCGAGG CGGCCACGCG CCAGGCAGGC
GCGGCGCTGC TGCCGTCGCT CAATGGCGAG CTGCGCGCCC AGCGCATGAA CCATGCACAG
GTGGCGGGCG GGCAGGCCAG CGTCTACGGC GCCGCGCTGA CGGCCTCGTA TGAGGTGGAC
TTCTGGGGCC GCAACCGCGC CACGCGCGAT GCGGCGGCGG CGGCCTGGCA GGCCAGCCGG
TTCGACCAGG ACACGGTGCG CCTCACGGTC ACCGCCCAGG TGGCCCATGG CTGGCTGCAG
GCCGTGGCGC TGCGCGAACG CCAGGCCATT GCGGCGCGCA ACGTGGCCAA TGCCGAGCGG
CTGCTGGGCC TGGTGGAGTC CCGCGCGCGC GCAGGCGCCG CCACCCAGCT GGAGCTGGCG
CAGCAACGCG GCCTGGTGGC CAGCCAGCGC CAGGCCCTGG CCACGCTGCG CCGCCAGGGC
GAGGATGCCG ATGCCACGCT GGCCGTGCTG CTGGGCCAGG CCCGCCGCCC CGCGCTGGCC
ACGGATTCGC TGCAAGCCCT GCAACTGCCC GAGATCGGCG CAGGCCTGCC CACGCAGCTG
CTGCAGCGCC GGCCCGACAT TGCCAATGCG GAAGCGCAGC TGGCCGCCGC CAGCGCCAAC
CTGCAGGCCG CCCGCGCAGC GCTGTGGCCC CGGCTGACCC TCACGGGCAG TGCAGGCACC
AGCGCTGGGC GCGCCAGCGA CTGGCTGCGC GAGCCTGTCT ATTCGCTGCT GGCCGGCCTC
GCCGGCCCCA TCTTCGACGG CGGCCGTCTG GCGGCCGAAC GCGATGGCGC CCAGGCCCGG
CGCGAGGAGC TGCTGGCCGG CTATTACAAG TCCATCGTCG CCGCCTATGG CGATGTGGAC
CTGGCGCTCA ACGCCGTCCA CGGCCTGAAG GCCCAGGCCG AGGCCCAGGC CGAGGTGCTG
GCCCAGGCCC GCCAGGCCGT GTCGCTGGCC GAGCTGCGCT ACAAGGCCGG GGCGGAAAGC
CTGCTGTCCC TGCTGCAGGC CCAGACCACG CTGTACGCGG CCCAGGACGA TGCCGTGCTG
CAGCGCCTGC TGCAGCTGCA GGCGCGCGTG GCGCTGTACC GTGCGCTGGG CGGGGGATGG
GAGGCGCCTG CCGTAGGCAC TGAAATGCCG GAAAGGCAGG CACAAAAAAG CCAGGAGGCA
TTGCCACCTG GCTGA
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| Protein sequence | MKDMNDKTMP ARLGCIALAL AALGGCAAQQ TMPDRTAPAL AASWKQQGEA VPASVSPQWW
QAFGSTELGG MVQAAQDQSL DMAAAMARVR QAEAATRQAG AALLPSLNGE LRAQRMNHAQ
VAGGQASVYG AALTASYEVD FWGRNRATRD AAAAAWQASR FDQDTVRLTV TAQVAHGWLQ
AVALRERQAI AARNVANAER LLGLVESRAR AGAATQLELA QQRGLVASQR QALATLRRQG
EDADATLAVL LGQARRPALA TDSLQALQLP EIGAGLPTQL LQRRPDIANA EAQLAAASAN
LQAARAALWP RLTLTGSAGT SAGRASDWLR EPVYSLLAGL AGPIFDGGRL AAERDGAQAR
REELLAGYYK SIVAAYGDVD LALNAVHGLK AQAEAQAEVL AQARQAVSLA ELRYKAGAES
LLSLLQAQTT LYAAQDDAVL QRLLQLQARV ALYRALGGGW EAPAVGTEMP ERQAQKSQEA
LPPG
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