Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3267 |
Symbol | |
ID | 5748852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 3575792 |
End bp | 3578635 |
Gene Length | 2844 bp |
Protein Length | 947 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641298371 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001564290 |
Protein GI | 160898708 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.059115 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000153402 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTAGGAC CCGATGGCTT GAAGGCTGGT TGCACCATCA AACAAGAATC ATTCTCAAAT CATTGTAACC AGCGGCAGCA CTTGCCTAAG AGTGCCATCA GGCGGACCAT CCATGGGCGA ACAGAGGGAG CAAGTGCGAT CAGGTGTGGC TGGACATCCA GCTGCTGCGC CGGATCGGTA TCATTTAGAA ACAATCAATC ATCAGCTCAG CATCCATCAG GAGAGCGAAC CATGTTCGAA ACGCGGGTAG CAGGCACGGC AGGGCAGCAG GCGCTGTGGA GCACGCTGGA CAAGGCCATG GCGCTGGCGG AGTTCACGCC CGAAGGCCGG CTGATGCGCG CCAACGCCAA TTACGAAGCC ATTCTTGGCT ACCCGACCTC GGGCGCCGAG GGCCTGCTGC ACAGTGACCT GTGCACCCAG GCACATGCCG ATCCCGACGC CTACGGCCGG TGGCGCCAGC GCTGGGGCGC GGGCGAGACG ATCTCGCGCG TGGGCGAACA CCGGCGCCGC GACGGCAGCA CCTGCTGGCT GGAGGCCACC TATGCCCCCG TGCTGGATAC CCAGGGCGCG CTCAGCCATG TGCTGTGCAT TGCCACCGAC ATCACGGCCC GGGTGCAGGC CGACCGCAGA CGGCAGGAGC ATTTGCGGCG CCTGTCCCTG GTGGCCGATG CCACCGACGC AGCCGTGGTG ATCGCCGACG GCAACTGGAC CATCTCCTAT GTCAACGCAG GCTTCACCCG CATGTTCGGC TGGAGCAGCG AAGAGGTCGT GGGCCGTGCG CCCATCGCCC TGCTGGTGCC GCATGCCTCG CCCGAATTCA CGGCCGCCTA CCGCGCCGAA CTGGACGCAG GCAAGCCGGT GTACCGCGAG GAAATCCTCG TCGGCAAGGA CGGCGAGCGG TATTGGGTCA GCGCCCAGGC CAATCCCGTC ATGGGCCCCG ACGGCCGCCT CCACACCACG GTGACCGTGA TCACCGACAT CACCGAGGCC AAGATGCACG AGGTGCTGCA GCGGCGCGCC CTGGAGGCCA TGGCGCGCGA CCAGCCGCTG ACCGAGGTGC TGGACCTGGT CTGCCGCGAG GTCGAGCGCA TTGCGCCCGA CATTGCGGTC TCGGTGCTGG AAGTCGATGA CCAGAGCCGC CTGCACCCGC TGGCCGCGCC CAGCCTGCCG GCCTCCTATT CGGCGGCGCT GGACGGCGTG CCCATCGGCC CCAATGTCGG TTCCTGCGGC GCGGCGGCCT TCCACAACCG GCCCGTGCTG GTGGGCGACA TCGCCACCGA TCCGTTGTGG GCCGACTTCA AGCACCTCAT CCTGCCGCTG GGGTATACGG CCTGCTGGTC CACGCCCATC TGCGGGCTGC AGGGCGGCGT GGCCGGCACC TTTGCCTTCT ACTACCGCCA TTTCGACCGG CCCGGCCCCG ATCCCTTCCA CCAGCGGCTG GTGGAGGCCT GCACCGACCT GTGCGCGCTG GCGCTGGAGC GCGAGCAGGC ACGCCGCCGC ATCCGGCAGC TGGCCTTCTA CGACGGGCTG ACCACCCTGC CCAACCGCAG CCTGCTGCTG GCCCAGGCCG AGCAGGCGCT GTCCGTGGCT TCTCACGAGG GCCACGAGCT GGCCGTGGTC TTCATCGACC TGGACCGCTT CAAGCAGGTC AACGACTCGC TGGGCCACCC GGCCGGCGAC CGGCTGCTGT GCAGCGTGGC CCAGCGCATC CAGGCGGAGC TGCGCACGGG CGACATTGCC GGGCGCCTGT CGGGCGATGA ATTCGTCATC GTGCTGCCAC ACTGCGGCGG TGCGCAGGCG GCCGAGGTGA TCGAGCGGCT GCAGTCGGCA CTTGGCGAGC CCTGCATGAT CGACGACGTG TCCCTGGCCA GCACGGCCAG TTGCGGCATT GCCGTGTTTC CCGCCGACGG GCGCGACATG GAGACCCTGC TGCACCGCGC CGACATGGCC ATGTACCAGG CCAAATCGGG CGGGCGCGGG CTCTACAGCT TCTTCAGCCC CGAGATGAAC CGCCTGGCGC AGGAGCGGCT GGTGCTGGAG ACGGCGCTGC GCGACGCCCT GCGCAGCGGC GGCCTGCGAC TGCACTACCA GCCCCAGCTC GACCTGAAGG ACGGGCGCCT CTACGGCGTG GAGGCCCTGG CGCGCTGGAG CCATGCGGAA TTCGGCGAGA TCTCGCCCGC ACGCTTCATT CCGCTGGCCG AGGAATGCGG CCTGATCGGC GAGCTGGGCA CCTGGGCACT GCGCGAGGCC TGCCGCCAGC TGGGCGAGTG GCGCAGCCGG GGCATTGACG TGCCGGCCAT GTCGGTCAAC CTCTCGCCCA CCAGCTTTCA CAACCTGGAC CTGCCGCGCA TGATTGCCGA CACGCTGGAG CACAACGCGC TCAAGCCGCA GGACCTCACG CTGGAGATCA CCGAAAGCCT GCTGCTGGAC ACCAACCCGG GCACCATGCG CACGCTGCAG GCCGTGCATT CCCAGGGCGT GCGCCTGTCC ATGGACGACT TCGGCACGGG CTACTCCAGC CTCAGCTACC TGCGCCGCCT GCCGGTCAGC GAGCTCAAGC TGGACCGCAG CTTCGTGGCC GACCTGGAAA ACGACGAAGC CGCCCAGGCC CTGAGCAACG CCATCCTGGG CATAGGCCGC AGCCTGCACC TGACCGTGGT GGCCGAGGGA GTGGAGACGG CGGCGCAGAA CACCATCCTG CGCGAACAGG GCTATCCGGT CGCGCAGGGC TATCTGTTCT CGCGCCCGCT GCCGGCAGCG GATCTGGAGC GGTGGCTGCA GGCATCGAGC CTGCAAGCCG GCCTGGCGAC GGACGTGGGA TCGGACGTGG GATCGGACGT GTGA
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Protein sequence | MVGPDGLKAG CTIKQESFSN HCNQRQHLPK SAIRRTIHGR TEGASAIRCG WTSSCCAGSV SFRNNQSSAQ HPSGERTMFE TRVAGTAGQQ ALWSTLDKAM ALAEFTPEGR LMRANANYEA ILGYPTSGAE GLLHSDLCTQ AHADPDAYGR WRQRWGAGET ISRVGEHRRR DGSTCWLEAT YAPVLDTQGA LSHVLCIATD ITARVQADRR RQEHLRRLSL VADATDAAVV IADGNWTISY VNAGFTRMFG WSSEEVVGRA PIALLVPHAS PEFTAAYRAE LDAGKPVYRE EILVGKDGER YWVSAQANPV MGPDGRLHTT VTVITDITEA KMHEVLQRRA LEAMARDQPL TEVLDLVCRE VERIAPDIAV SVLEVDDQSR LHPLAAPSLP ASYSAALDGV PIGPNVGSCG AAAFHNRPVL VGDIATDPLW ADFKHLILPL GYTACWSTPI CGLQGGVAGT FAFYYRHFDR PGPDPFHQRL VEACTDLCAL ALEREQARRR IRQLAFYDGL TTLPNRSLLL AQAEQALSVA SHEGHELAVV FIDLDRFKQV NDSLGHPAGD RLLCSVAQRI QAELRTGDIA GRLSGDEFVI VLPHCGGAQA AEVIERLQSA LGEPCMIDDV SLASTASCGI AVFPADGRDM ETLLHRADMA MYQAKSGGRG LYSFFSPEMN RLAQERLVLE TALRDALRSG GLRLHYQPQL DLKDGRLYGV EALARWSHAE FGEISPARFI PLAEECGLIG ELGTWALREA CRQLGEWRSR GIDVPAMSVN LSPTSFHNLD LPRMIADTLE HNALKPQDLT LEITESLLLD TNPGTMRTLQ AVHSQGVRLS MDDFGTGYSS LSYLRRLPVS ELKLDRSFVA DLENDEAAQA LSNAILGIGR SLHLTVVAEG VETAAQNTIL REQGYPVAQG YLFSRPLPAA DLERWLQASS LQAGLATDVG SDVGSDV
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