Gene Daci_3255 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3255 
Symbol 
ID5748839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3558836 
End bp3563503 
Gene Length4668 bp 
Protein Length1555 aa 
Translation table11 
GC content62% 
IMG OID641298358 
Productprophage tail length tape measure 
Protein accessionYP_001564278 
Protein GI160898696 
COG category[S] Function unknown 
COG ID[COG5281] Phage-related minor tail protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0755523 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000000332378 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCGAAG AAATAGGCGC GATCCACTTC AAGGCCGATA CCACTGATCT TGAGCGCGCC 
CAGAAGCAGC TTGAGAAGCT CGGCCAGTCT GGGCCTGGTG TTGAGGCTGC GGCAAAGAAA
ATCGGGGAGA GCATTGGCTC CATAGGCAAT GGAGGTCAGC AGGCTGCGCA GAAGGTCGAT
GGCGCTTCGC GATCCATCAT CGACAGCATC AAGAAGACCA CTGCGGCAAG CGAGGCGGGC
GAAAAATCTG TTGGCAAGTT CTATGAGGTG CTTGGCAAGC CCGCCAACAT TGGTGGAGAT
GTTTTATCCC CCTACCTTGA TCAGCTGAAG AAGGCGGATA CCGCGCAAAA CGCGGCGGTG
CAAAGTCTGG GCAAGATCGG AATGTCCGCC AAGGCGACGG AAGCCGCCCT GCGCGGTGTT
CCCGCCCAGT TCACGGACAT CGTGGTGTCC CTGCAAGGCG GCATGAATCC CATGACCGTC
TTCCTGCAGC AGGGAGGGCA GCTGAAGGAC ATGTTCGGCG GCGCAGGGGC GGCTGCAAAG
GCGCTCGCAG GGTATGTGTG GGGGCTGGTG AACCCGCTCA CAGTGGCCGC TGCCGGCGCA
GCTGCACTGG GCGTTGCGTA CTATCAAGGC TCAAAGGAGA GCGACGCATT TGTCCGGTCC
ATTGTGCTGA CCGGGAATGC GTCTGGTGTC ACTTCCAGTC AGCTGCGCGA CTACGCCAGG
CAGATCGATG CCGTGGTGGG AACTCAAGCA CAGGCTGCGT CCGGCTTAGC TGATTTTGTC
GCGGCCGGCG TGCGCGGTGG CGAAGAGCTG CGCCGCTACA CGCAGACAGC CATTGAATGG
GAGAAGCTCA CGGGCCAGGC TGTCAGCAAG ACGGCTGACC AGTTCGCCAG CCTGCAAAAG
GATCCGTTGG CCGCCGTCAT CAAGCTCAAC GAGGGGACAA ACTTCCTGAC GGTATCCGTG
TACGAGCAGA TCAAGGCCCT AGATGACCAG GGCCGCAAGG CTGACGCATC CAAGGTAGCC
ATGGAGGCGC TGGACGGCGC CATGCGTGAG CGCGGCGCGT CAATCAGGGA GTCCCTCGGG
TACATCGAAA GAGGATGGGC GGCTATCAAA GGCAAGGCTG CTGAAGCGTG GGACGCAATG
CTCAATGTGG GGCGTGCTGC AACGCTCAAC GACCAAATCA ATGCAGCACA GGCAGAGCTG
GAGCGGAAGC TGACGGAGCC GCTTGCTGTC GATAACGCTG CCATGCGTGC ATCGCGCGAA
AAAGGCATTG AAATTCTGCG CAAGGAGATT TGGGCTCTCT ACGAAAAAGC TGATGCCGAA
AAAATCGCAG CCATGCAGCA GCAGGAGTCT TCCCGTGTAA TGGCTGCGCG TCTTGCCTTC
GACAAGGACT ACGCCAAAGC CCTTGAAAAT GAAGCAACTC TCCAGGAAAA GTTGGCCAAG
ATCCGACGTG AAGGGGAAGA CGCTGGTAAA TCGGAAGCTG AGATAAAGCG TGTTCTGGCC
TACGAGACAG AGCAGTACAA CAAAGCCAAC AAGGGCAGTG CTGCTGCTGC GCGCGAGGCC
AAAAAGGAGC TGTCCGATCA AGCCAAGGTC TATGCAGAAC TGGCCGGATT TAGCAGCACT
TATTACGAAG AGCTGGCGCG TGGTCAGAAA GAATTCGAGA AGGGAAACAT CACCCAGGCT
CAGTACGTCA AGTACGTCGA AGACCTGATC AAGAAGCAGC CTTTCGCCAT CGCCCTGGCC
AAGGAAGAGG AGAAGTCCCG CCGCGACCTG CAGAAGGCCA TCGAGGACGA CATCAAGCAG
GCCGACCGCC TGGCCGACAA GCGTCAAGCT GCGATCAAGT CTGCAGAGGA TGCCGTGCGC
AAGGCGCGCC AGGAAGAGGA GGCGCATGCC CTTGCTGCTG CTGCCAACAT CACGCTGGCC
GAGGCCGTGG AGCGCCTGAC CATCGCGCGT CTGGAAGACC AGCTGCAGAT GGCCCGCATG
GGCACGGAGT CGCAGGCCAC CATTGATGCC CTGGAGCGGG AGCTTGCCGC GCGCAAGGAA
CTGCTGGGCG TGCTGCAGCA GAAGGGCTTC CGCGAGGGAA ACAAGAAGGC GGCGGACGAG
GCGGCGAAGG ACTGGGACAA GACCGCCCAG ACCATCAGCC GGACCTTGAG CGACTACATC
ATGGCCGGCG GCAAGGACGC CGCCCAGTAC CTCAAGCGAC TGTTTGCCAC GTTGGTGCTT
GAGCCTGTCG TCCAGGCAGT CATGGGCGGC ATCTTCGGAG GTGGTGGGGC AGGCGCGGCT
GCCAGCGGCG TTGTTGGCAG CGCTGGCTCG GGGTTGGTCA GCAATCTGCT GTTCGGCGGC
ATGTCGCTTA CCACGGTTGG CAGTTCCATT GGCGCCGGCA TCATGGCTAC GCTGACGGGC
TCCACTCTGG GCGGCGCGGG CGCGGCGGGC ATCTTGGCCG GTGGCTCGTC GGCCCTCGGC
ATGTTTGGTG GGGCGCTTCC GTACCTGGGT GCAGGACTGG CGCTGTTCAA GATCCTGAAG
GGTGATTGGT TTGGTTCGCG CGGCCCGAAC CACTCGGGCG GCGTCGCATC CACGGCGACC
ACCGACCGCG ACCTTGCCGT GAAGCAAGTG CTTGGCACAG ATGCTTGGGG CAACACCCTC
GGCGACTTCA CCACGCGCAA GAACGAGGCG CTCGACAAGC AGCTGCAAAA GACCGTCAAC
GGCATGCTTG AGATGTACAA GGCCCTGGCC AAGATCGGCG GGGGTGGCGC GCGAGAGATC
GACATCGCGG CCGGGTTTTC GACGAACCCC AAGTATGCGG ATGAAGGCGT GTATGGCTAC
TTCCAGATCC TGGACAAAGT CACGGGCGAA GTGCTGAAGA AGTACAAAAA CCGGGACATG
GACAGGGACC CGGAGAAGGC TTGGGCGCAG TTTGTGGCCG ACATGGGCGG GGAGCTTGTC
AACGAGATCA AGAAGGGCGA CATCCCTGGC TGGATGCGTG AAGAGCTGGA CGCGCTGGGC
GAGGACGTGA CGGTCGAGGG ACTCAACGCT GCGATCCAGA AGATCGCGGT GATCGATGCT
GCCTTCAAGG GCTGGGCTGA CACGATGACC AGCTTTGCCG GGCTCACGGC CAAGGCCCAG
ACCGAGCTGC TCAAGTTCTC GGGCGGCATC GAAGCGCTGG CCGGCAACGT GAACGCCTTC
TACGCAGGGT TTTATAGCGA ACAGGAAAGG GCCGAGATCT TGCAACGCCA AGTCCGCGAC
CAGCTCAAAA AGCTGGGAGT CGTGGACATC GACCCCGCTG GCGGCGAAGA GGCAAAGAAG
AAATTCCGCG CCCTCATCGA GCAGGCGCTG GCCTCTGGAA ACACGGAGCT TGCGGCAAAG
CTGCTGGCCC TGGCGCAGCT GTTCGGCATC GCTGCCGACT CGGCCCAGAA GTCGGCGGAG
GCAGCGGCCG ATGCGGCCAA GTCGGCAGCA GACGAAGCAG CGCGCGCACT GGAGGAGGCC
AAGCAGAAGG CCAAGGACGC CGCGCTGGCG AACTTTGAAG CGGCGGTGCA GCGCGAGCAG
GAGTACTGGC AGCGGATCGT GACGGACTCG CAGGCAGCAG TGCAGGCGAT ATCCAGCATC
CTGACGCCGC TGAAGCAGAA CGCGAAGGAG CTTTTTGGCT CCATCGATGC TGCTCAGCAG
ATGCAGGCCG CTGCGGGCAT GGTCTACATC GAGCAGGCCC TGGCGGGCGT GCGCGGCGGC
GCCAAGCTGT CCAGCTACGA CGGGCTCACA GACGCAATCA CCGCGGCGCG CGGCGGCATC
ACATCGGGCC GCTACGCATC GCAGTTCGAG CGCGACCGCG ACGCTCTGGT GCTGGCCAAC
CAGCTCAGCC AGATCGCTGG CTACGGGGAT GCTCAACTCT CCACAGAGGA GCGGCAGCTC
AAGAACTCGC AAGAGCAGCT TGAGGGCCTC AACAAGACGC TGAGCTACTG GCGCGACCTG
TTGGACGGCA GCAAGGCGCA GATCGACGCC ACGCTGAGCG TTGAGAAGGC CATCGAAGCG
CTGAGGGCGC TGATGTTCCC GGACACAGCG GGCGGCACGG GCGGCTCCAA GACGCCTGTG
CCAGGTGGCA ACGGGCGGCC TGGCTGGGGG CAGGGAGGCG CTGGCAGCGG CACGACATCG
AAGTACGGCA GCGTCAACAA CGTGGGCGGA ATCACCTGGC GTGACCCAAT CACTGACCCG
GACCGTATCT CGCATCTCGA TGACATCAAC GCGATCAAGA GCAAGTACGA CGGCACGGGC
GACGTTGCTG GCCTGTGGGC CGAGGCATCG GCCGCCGGCG CAACTGCCAA GGATCTCGCA
GACATCTACG GGTTCTACGA GCGCGACGTG CTTGCAGCTC TGCGTGCGGC TGGTGTGCCT
GGCTTCGACG TTGGGACCAA CCGTGTGCCG CAGGACATGC TGGCCATCGT CCACAAGAAC
GAGGCCATCG TGCCGGCTGC CTTCAACCCA TGGGCGGGCG GTACTGGCAT GGGTAGCGGC
AACGACAACG CCCGGCTTGA GGCATTGATG GCGCAGCTGA TTGATGAGAA CCGCACTCAG
GCGGGCCAGA TCGTCCGGCT CCAGGGGGTG GTGGCGAAGC TGCTGCAGCG ATGGGATGGC
GACGGTATGC CGCAGCCACG CAAAGAAGGA GAGGGGGTAA CAGCATGA
 
Protein sequence
MSEEIGAIHF KADTTDLERA QKQLEKLGQS GPGVEAAAKK IGESIGSIGN GGQQAAQKVD 
GASRSIIDSI KKTTAASEAG EKSVGKFYEV LGKPANIGGD VLSPYLDQLK KADTAQNAAV
QSLGKIGMSA KATEAALRGV PAQFTDIVVS LQGGMNPMTV FLQQGGQLKD MFGGAGAAAK
ALAGYVWGLV NPLTVAAAGA AALGVAYYQG SKESDAFVRS IVLTGNASGV TSSQLRDYAR
QIDAVVGTQA QAASGLADFV AAGVRGGEEL RRYTQTAIEW EKLTGQAVSK TADQFASLQK
DPLAAVIKLN EGTNFLTVSV YEQIKALDDQ GRKADASKVA MEALDGAMRE RGASIRESLG
YIERGWAAIK GKAAEAWDAM LNVGRAATLN DQINAAQAEL ERKLTEPLAV DNAAMRASRE
KGIEILRKEI WALYEKADAE KIAAMQQQES SRVMAARLAF DKDYAKALEN EATLQEKLAK
IRREGEDAGK SEAEIKRVLA YETEQYNKAN KGSAAAAREA KKELSDQAKV YAELAGFSST
YYEELARGQK EFEKGNITQA QYVKYVEDLI KKQPFAIALA KEEEKSRRDL QKAIEDDIKQ
ADRLADKRQA AIKSAEDAVR KARQEEEAHA LAAAANITLA EAVERLTIAR LEDQLQMARM
GTESQATIDA LERELAARKE LLGVLQQKGF REGNKKAADE AAKDWDKTAQ TISRTLSDYI
MAGGKDAAQY LKRLFATLVL EPVVQAVMGG IFGGGGAGAA ASGVVGSAGS GLVSNLLFGG
MSLTTVGSSI GAGIMATLTG STLGGAGAAG ILAGGSSALG MFGGALPYLG AGLALFKILK
GDWFGSRGPN HSGGVASTAT TDRDLAVKQV LGTDAWGNTL GDFTTRKNEA LDKQLQKTVN
GMLEMYKALA KIGGGGAREI DIAAGFSTNP KYADEGVYGY FQILDKVTGE VLKKYKNRDM
DRDPEKAWAQ FVADMGGELV NEIKKGDIPG WMREELDALG EDVTVEGLNA AIQKIAVIDA
AFKGWADTMT SFAGLTAKAQ TELLKFSGGI EALAGNVNAF YAGFYSEQER AEILQRQVRD
QLKKLGVVDI DPAGGEEAKK KFRALIEQAL ASGNTELAAK LLALAQLFGI AADSAQKSAE
AAADAAKSAA DEAARALEEA KQKAKDAALA NFEAAVQREQ EYWQRIVTDS QAAVQAISSI
LTPLKQNAKE LFGSIDAAQQ MQAAAGMVYI EQALAGVRGG AKLSSYDGLT DAITAARGGI
TSGRYASQFE RDRDALVLAN QLSQIAGYGD AQLSTEERQL KNSQEQLEGL NKTLSYWRDL
LDGSKAQIDA TLSVEKAIEA LRALMFPDTA GGTGGSKTPV PGGNGRPGWG QGGAGSGTTS
KYGSVNNVGG ITWRDPITDP DRISHLDDIN AIKSKYDGTG DVAGLWAEAS AAGATAKDLA
DIYGFYERDV LAALRAAGVP GFDVGTNRVP QDMLAIVHKN EAIVPAAFNP WAGGTGMGSG
NDNARLEALM AQLIDENRTQ AGQIVRLQGV VAKLLQRWDG DGMPQPRKEG EGVTA