Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3255 |
Symbol | |
ID | 5748839 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 3558836 |
End bp | 3563503 |
Gene Length | 4668 bp |
Protein Length | 1555 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641298358 |
Product | prophage tail length tape measure |
Protein accession | YP_001564278 |
Protein GI | 160898696 |
COG category | [S] Function unknown |
COG ID | [COG5281] Phage-related minor tail protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0755523 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000000000332378 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCGAAG AAATAGGCGC GATCCACTTC AAGGCCGATA CCACTGATCT TGAGCGCGCC CAGAAGCAGC TTGAGAAGCT CGGCCAGTCT GGGCCTGGTG TTGAGGCTGC GGCAAAGAAA ATCGGGGAGA GCATTGGCTC CATAGGCAAT GGAGGTCAGC AGGCTGCGCA GAAGGTCGAT GGCGCTTCGC GATCCATCAT CGACAGCATC AAGAAGACCA CTGCGGCAAG CGAGGCGGGC GAAAAATCTG TTGGCAAGTT CTATGAGGTG CTTGGCAAGC CCGCCAACAT TGGTGGAGAT GTTTTATCCC CCTACCTTGA TCAGCTGAAG AAGGCGGATA CCGCGCAAAA CGCGGCGGTG CAAAGTCTGG GCAAGATCGG AATGTCCGCC AAGGCGACGG AAGCCGCCCT GCGCGGTGTT CCCGCCCAGT TCACGGACAT CGTGGTGTCC CTGCAAGGCG GCATGAATCC CATGACCGTC TTCCTGCAGC AGGGAGGGCA GCTGAAGGAC ATGTTCGGCG GCGCAGGGGC GGCTGCAAAG GCGCTCGCAG GGTATGTGTG GGGGCTGGTG AACCCGCTCA CAGTGGCCGC TGCCGGCGCA GCTGCACTGG GCGTTGCGTA CTATCAAGGC TCAAAGGAGA GCGACGCATT TGTCCGGTCC ATTGTGCTGA CCGGGAATGC GTCTGGTGTC ACTTCCAGTC AGCTGCGCGA CTACGCCAGG CAGATCGATG CCGTGGTGGG AACTCAAGCA CAGGCTGCGT CCGGCTTAGC TGATTTTGTC GCGGCCGGCG TGCGCGGTGG CGAAGAGCTG CGCCGCTACA CGCAGACAGC CATTGAATGG GAGAAGCTCA CGGGCCAGGC TGTCAGCAAG ACGGCTGACC AGTTCGCCAG CCTGCAAAAG GATCCGTTGG CCGCCGTCAT CAAGCTCAAC GAGGGGACAA ACTTCCTGAC GGTATCCGTG TACGAGCAGA TCAAGGCCCT AGATGACCAG GGCCGCAAGG CTGACGCATC CAAGGTAGCC ATGGAGGCGC TGGACGGCGC CATGCGTGAG CGCGGCGCGT CAATCAGGGA GTCCCTCGGG TACATCGAAA GAGGATGGGC GGCTATCAAA GGCAAGGCTG CTGAAGCGTG GGACGCAATG CTCAATGTGG GGCGTGCTGC AACGCTCAAC GACCAAATCA ATGCAGCACA GGCAGAGCTG GAGCGGAAGC TGACGGAGCC GCTTGCTGTC GATAACGCTG CCATGCGTGC ATCGCGCGAA AAAGGCATTG AAATTCTGCG CAAGGAGATT TGGGCTCTCT ACGAAAAAGC TGATGCCGAA AAAATCGCAG CCATGCAGCA GCAGGAGTCT TCCCGTGTAA TGGCTGCGCG TCTTGCCTTC GACAAGGACT ACGCCAAAGC CCTTGAAAAT GAAGCAACTC TCCAGGAAAA GTTGGCCAAG ATCCGACGTG AAGGGGAAGA CGCTGGTAAA TCGGAAGCTG AGATAAAGCG TGTTCTGGCC TACGAGACAG AGCAGTACAA CAAAGCCAAC AAGGGCAGTG CTGCTGCTGC GCGCGAGGCC AAAAAGGAGC TGTCCGATCA AGCCAAGGTC TATGCAGAAC TGGCCGGATT TAGCAGCACT TATTACGAAG AGCTGGCGCG TGGTCAGAAA GAATTCGAGA AGGGAAACAT CACCCAGGCT CAGTACGTCA AGTACGTCGA AGACCTGATC AAGAAGCAGC CTTTCGCCAT CGCCCTGGCC AAGGAAGAGG AGAAGTCCCG CCGCGACCTG CAGAAGGCCA TCGAGGACGA CATCAAGCAG GCCGACCGCC TGGCCGACAA GCGTCAAGCT GCGATCAAGT CTGCAGAGGA TGCCGTGCGC AAGGCGCGCC AGGAAGAGGA GGCGCATGCC CTTGCTGCTG CTGCCAACAT CACGCTGGCC GAGGCCGTGG AGCGCCTGAC CATCGCGCGT CTGGAAGACC AGCTGCAGAT GGCCCGCATG GGCACGGAGT CGCAGGCCAC CATTGATGCC CTGGAGCGGG AGCTTGCCGC GCGCAAGGAA CTGCTGGGCG TGCTGCAGCA GAAGGGCTTC CGCGAGGGAA ACAAGAAGGC GGCGGACGAG GCGGCGAAGG ACTGGGACAA GACCGCCCAG ACCATCAGCC GGACCTTGAG CGACTACATC ATGGCCGGCG GCAAGGACGC CGCCCAGTAC CTCAAGCGAC TGTTTGCCAC GTTGGTGCTT GAGCCTGTCG TCCAGGCAGT CATGGGCGGC ATCTTCGGAG GTGGTGGGGC AGGCGCGGCT GCCAGCGGCG TTGTTGGCAG CGCTGGCTCG GGGTTGGTCA GCAATCTGCT GTTCGGCGGC ATGTCGCTTA CCACGGTTGG CAGTTCCATT GGCGCCGGCA TCATGGCTAC GCTGACGGGC TCCACTCTGG GCGGCGCGGG CGCGGCGGGC ATCTTGGCCG GTGGCTCGTC GGCCCTCGGC ATGTTTGGTG GGGCGCTTCC GTACCTGGGT GCAGGACTGG CGCTGTTCAA GATCCTGAAG GGTGATTGGT TTGGTTCGCG CGGCCCGAAC CACTCGGGCG GCGTCGCATC CACGGCGACC ACCGACCGCG ACCTTGCCGT GAAGCAAGTG CTTGGCACAG ATGCTTGGGG CAACACCCTC GGCGACTTCA CCACGCGCAA GAACGAGGCG CTCGACAAGC AGCTGCAAAA GACCGTCAAC GGCATGCTTG AGATGTACAA GGCCCTGGCC AAGATCGGCG GGGGTGGCGC GCGAGAGATC GACATCGCGG CCGGGTTTTC GACGAACCCC AAGTATGCGG ATGAAGGCGT GTATGGCTAC TTCCAGATCC TGGACAAAGT CACGGGCGAA GTGCTGAAGA AGTACAAAAA CCGGGACATG GACAGGGACC CGGAGAAGGC TTGGGCGCAG TTTGTGGCCG ACATGGGCGG GGAGCTTGTC AACGAGATCA AGAAGGGCGA CATCCCTGGC TGGATGCGTG AAGAGCTGGA CGCGCTGGGC GAGGACGTGA CGGTCGAGGG ACTCAACGCT GCGATCCAGA AGATCGCGGT GATCGATGCT GCCTTCAAGG GCTGGGCTGA CACGATGACC AGCTTTGCCG GGCTCACGGC CAAGGCCCAG ACCGAGCTGC TCAAGTTCTC GGGCGGCATC GAAGCGCTGG CCGGCAACGT GAACGCCTTC TACGCAGGGT TTTATAGCGA ACAGGAAAGG GCCGAGATCT TGCAACGCCA AGTCCGCGAC CAGCTCAAAA AGCTGGGAGT CGTGGACATC GACCCCGCTG GCGGCGAAGA GGCAAAGAAG AAATTCCGCG CCCTCATCGA GCAGGCGCTG GCCTCTGGAA ACACGGAGCT TGCGGCAAAG CTGCTGGCCC TGGCGCAGCT GTTCGGCATC GCTGCCGACT CGGCCCAGAA GTCGGCGGAG GCAGCGGCCG ATGCGGCCAA GTCGGCAGCA GACGAAGCAG CGCGCGCACT GGAGGAGGCC AAGCAGAAGG CCAAGGACGC CGCGCTGGCG AACTTTGAAG CGGCGGTGCA GCGCGAGCAG GAGTACTGGC AGCGGATCGT GACGGACTCG CAGGCAGCAG TGCAGGCGAT ATCCAGCATC CTGACGCCGC TGAAGCAGAA CGCGAAGGAG CTTTTTGGCT CCATCGATGC TGCTCAGCAG ATGCAGGCCG CTGCGGGCAT GGTCTACATC GAGCAGGCCC TGGCGGGCGT GCGCGGCGGC GCCAAGCTGT CCAGCTACGA CGGGCTCACA GACGCAATCA CCGCGGCGCG CGGCGGCATC ACATCGGGCC GCTACGCATC GCAGTTCGAG CGCGACCGCG ACGCTCTGGT GCTGGCCAAC CAGCTCAGCC AGATCGCTGG CTACGGGGAT GCTCAACTCT CCACAGAGGA GCGGCAGCTC AAGAACTCGC AAGAGCAGCT TGAGGGCCTC AACAAGACGC TGAGCTACTG GCGCGACCTG TTGGACGGCA GCAAGGCGCA GATCGACGCC ACGCTGAGCG TTGAGAAGGC CATCGAAGCG CTGAGGGCGC TGATGTTCCC GGACACAGCG GGCGGCACGG GCGGCTCCAA GACGCCTGTG CCAGGTGGCA ACGGGCGGCC TGGCTGGGGG CAGGGAGGCG CTGGCAGCGG CACGACATCG AAGTACGGCA GCGTCAACAA CGTGGGCGGA ATCACCTGGC GTGACCCAAT CACTGACCCG GACCGTATCT CGCATCTCGA TGACATCAAC GCGATCAAGA GCAAGTACGA CGGCACGGGC GACGTTGCTG GCCTGTGGGC CGAGGCATCG GCCGCCGGCG CAACTGCCAA GGATCTCGCA GACATCTACG GGTTCTACGA GCGCGACGTG CTTGCAGCTC TGCGTGCGGC TGGTGTGCCT GGCTTCGACG TTGGGACCAA CCGTGTGCCG CAGGACATGC TGGCCATCGT CCACAAGAAC GAGGCCATCG TGCCGGCTGC CTTCAACCCA TGGGCGGGCG GTACTGGCAT GGGTAGCGGC AACGACAACG CCCGGCTTGA GGCATTGATG GCGCAGCTGA TTGATGAGAA CCGCACTCAG GCGGGCCAGA TCGTCCGGCT CCAGGGGGTG GTGGCGAAGC TGCTGCAGCG ATGGGATGGC GACGGTATGC CGCAGCCACG CAAAGAAGGA GAGGGGGTAA CAGCATGA
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Protein sequence | MSEEIGAIHF KADTTDLERA QKQLEKLGQS GPGVEAAAKK IGESIGSIGN GGQQAAQKVD GASRSIIDSI KKTTAASEAG EKSVGKFYEV LGKPANIGGD VLSPYLDQLK KADTAQNAAV QSLGKIGMSA KATEAALRGV PAQFTDIVVS LQGGMNPMTV FLQQGGQLKD MFGGAGAAAK ALAGYVWGLV NPLTVAAAGA AALGVAYYQG SKESDAFVRS IVLTGNASGV TSSQLRDYAR QIDAVVGTQA QAASGLADFV AAGVRGGEEL RRYTQTAIEW EKLTGQAVSK TADQFASLQK DPLAAVIKLN EGTNFLTVSV YEQIKALDDQ GRKADASKVA MEALDGAMRE RGASIRESLG YIERGWAAIK GKAAEAWDAM LNVGRAATLN DQINAAQAEL ERKLTEPLAV DNAAMRASRE KGIEILRKEI WALYEKADAE KIAAMQQQES SRVMAARLAF DKDYAKALEN EATLQEKLAK IRREGEDAGK SEAEIKRVLA YETEQYNKAN KGSAAAAREA KKELSDQAKV YAELAGFSST YYEELARGQK EFEKGNITQA QYVKYVEDLI KKQPFAIALA KEEEKSRRDL QKAIEDDIKQ ADRLADKRQA AIKSAEDAVR KARQEEEAHA LAAAANITLA EAVERLTIAR LEDQLQMARM GTESQATIDA LERELAARKE LLGVLQQKGF REGNKKAADE AAKDWDKTAQ TISRTLSDYI MAGGKDAAQY LKRLFATLVL EPVVQAVMGG IFGGGGAGAA ASGVVGSAGS GLVSNLLFGG MSLTTVGSSI GAGIMATLTG STLGGAGAAG ILAGGSSALG MFGGALPYLG AGLALFKILK GDWFGSRGPN HSGGVASTAT TDRDLAVKQV LGTDAWGNTL GDFTTRKNEA LDKQLQKTVN GMLEMYKALA KIGGGGAREI DIAAGFSTNP KYADEGVYGY FQILDKVTGE VLKKYKNRDM DRDPEKAWAQ FVADMGGELV NEIKKGDIPG WMREELDALG EDVTVEGLNA AIQKIAVIDA AFKGWADTMT SFAGLTAKAQ TELLKFSGGI EALAGNVNAF YAGFYSEQER AEILQRQVRD QLKKLGVVDI DPAGGEEAKK KFRALIEQAL ASGNTELAAK LLALAQLFGI AADSAQKSAE AAADAAKSAA DEAARALEEA KQKAKDAALA NFEAAVQREQ EYWQRIVTDS QAAVQAISSI LTPLKQNAKE LFGSIDAAQQ MQAAAGMVYI EQALAGVRGG AKLSSYDGLT DAITAARGGI TSGRYASQFE RDRDALVLAN QLSQIAGYGD AQLSTEERQL KNSQEQLEGL NKTLSYWRDL LDGSKAQIDA TLSVEKAIEA LRALMFPDTA GGTGGSKTPV PGGNGRPGWG QGGAGSGTTS KYGSVNNVGG ITWRDPITDP DRISHLDDIN AIKSKYDGTG DVAGLWAEAS AAGATAKDLA DIYGFYERDV LAALRAAGVP GFDVGTNRVP QDMLAIVHKN EAIVPAAFNP WAGGTGMGSG NDNARLEALM AQLIDENRTQ AGQIVRLQGV VAKLLQRWDG DGMPQPRKEG EGVTA
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