| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3144 |
|---|
| Symbol | |
|---|
| ID | 5748728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3459503 |
|---|
| End bp | 3461152 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641298247 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001564167 |
|---|
| Protein GI | 160898585 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.808997 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00122307 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTCC GCCTCCCGCG CCTGAAGCTG CAGCACAAGG CCTTCTTCGC CCTGGCCGTG
CTGCTGGTGG CCCTGCTGCT GGTGTTTCTC GGTTTCTCCC GCCTGGGCCT GCAGCGGGGC
CTGGGCCCGT ACATGGCCGA GGTGGAGCTG ACCGGCATGG ACGGGCTGGC CGAGCGGCTG
GTCCAGCACC ATGAGCAAAA CGGCGGCTGG GATGCGGCGC GCGCCAACCC CGGTTTCTGG
CGCGACATGG TGCGACCGGG CGCAGGCATG GGCCGGGGCT TTCCTGCGGG CGAGCCCGGG
CCACGGCCCC CCATGCCCAT GCCCATGCCC ATGCCGGAGC CGAGGCCTGG TTTTGAGGGA
AGCCACGGTC CGGGGCCGGG CCCGGGGTTT CCACCGCCAC CTGGGCCGGA AGGCGGAGAG
CGTGCCGATC GCTCAGATCG CTCAGATCGC TCCGACCGTA CAGACCGCCC AGACCGCCCA
GGCCCGCCGC CAGACCGCCC GTTCGGCGGC CCGTGGGCGC GCGTGGGCCT GCTGGATGCC
CAGGGCCAGC TCATCTCCGG CATGACGCCG CAGCCCGGTG TGGCGCACCG CGTTCTGCGC
GCCGCCAACG GGCAGGCCAT TGGCGAGATC GTGCTGTCCC CCGTGCAGAC AGGGCAGGGC
ATGCAGCGCG ACCTGGACCG CGCCTTCCTC GCGCAGCAGA TGGGTTTTGT GGCCTGGACC
GGGCTGGCCG GCCTGCTGCT GGCGCTGCTG CTGTCGGCCT GGCTCACGCG GCGCTGGCTG
GAGCCGCTGA CCGCCTTCGT CGACGGCCTG CGCGGCATTG CGGCCGGGCG GCTGGATACG
CGCGTGGCCA TCAAGGGCGA TGCGGAGCTG GCCCGCCTTG CGGAAACCTT CAACGACATG
GCCGTGCAGC TGGCCACCAT GGAGGCCTCG CGCCAGCGCT GGCTGGCCGA CGTGGCGCAT
GAGCTGCGCA CGCCCCTGTC CACCATGCGC GCCGAGGTCG AGGCCGTGCA GGACGGCGTG
CTGCCCATGG ACGACCGCAT GGCGCTGCGC CTGCACCGGC AGATCATGCG GCTGATACGG
CTGGTCAGCG ACCTGCGCGT GAGCCTGGAC GACCCGCAGG CCCTGCACGG CTCGGGCCAT
GTGCCCGTGC ATGTGCTGAC CCTGCTGGGC GAGGCGCTGG ACGGCGCACG GCCGGGCTTC
GAGCAGGTCG GCATCGGCCT GGACCGCTCC ACCGTGGACC AGCTGGCTGC GCGCGTTCCG
CCGCCGCTGG TGCAGGGCGA CCCGCACCGG CTGCACCAGG TGTTTGCCAA CCTGCTGGAA
AACAGCCTGC GCTACACGGC TGCGGGCGGG CGGCTGCAGG TGTCCGCCGA AATCGTCCAG
ATGCAGGACC GCAGCATGCT GCAACTGCGC TGGGACGACA CGGCTCCCGG CGTGGCCAGC
CCGCACCTGC CGCGCCTGTT CGACCGCCTC TATCGCGTGG ACGCCTCCCG CGTGCGCGAT
GGCGACGGCC TGGGCGGCTC CGGCCTGGGG CTGGCCATCT GCCGCACCAT CGTCCAGGCC
CATGGCGGCA GCATCGAGGC CGCTGCCTCG CCGCTGGGCG GCCTGCGCAT CACGCTGTGG
CTGCCCTTGC TGGAAAATCC CGCGCCATGA
|
|---|
| Protein sequence | MSLRLPRLKL QHKAFFALAV LLVALLLVFL GFSRLGLQRG LGPYMAEVEL TGMDGLAERL
VQHHEQNGGW DAARANPGFW RDMVRPGAGM GRGFPAGEPG PRPPMPMPMP MPEPRPGFEG
SHGPGPGPGF PPPPGPEGGE RADRSDRSDR SDRTDRPDRP GPPPDRPFGG PWARVGLLDA
QGQLISGMTP QPGVAHRVLR AANGQAIGEI VLSPVQTGQG MQRDLDRAFL AQQMGFVAWT
GLAGLLLALL LSAWLTRRWL EPLTAFVDGL RGIAAGRLDT RVAIKGDAEL ARLAETFNDM
AVQLATMEAS RQRWLADVAH ELRTPLSTMR AEVEAVQDGV LPMDDRMALR LHRQIMRLIR
LVSDLRVSLD DPQALHGSGH VPVHVLTLLG EALDGARPGF EQVGIGLDRS TVDQLAARVP
PPLVQGDPHR LHQVFANLLE NSLRYTAAGG RLQVSAEIVQ MQDRSMLQLR WDDTAPGVAS
PHLPRLFDRL YRVDASRVRD GDGLGGSGLG LAICRTIVQA HGGSIEAAAS PLGGLRITLW
LPLLENPAP
|
|---|
| |