Gene Daci_3117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3117 
Symbol 
ID5748701 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3434440 
End bp3435738 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content71% 
IMG OID641298220 
ProductD-amino acid dehydrogenase small subunit 
Protein accessionYP_001564140 
Protein GI160898558 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.459659 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTCC TTGTTCTTGG CGGCGGTGTC ATCGGCGTGA CCAGTGCGTA CTACCTGGCG 
CGGGCCGGTG CCGAGGTCAC GGTGCTGGAC CGGCAGGATG CGCCCGCGTC CGAAACCAGC
TTTGCCAACG CGGGCCAGGT CTCGCCCGGC TACTCCACGC CCTGGGCGGC GCCCGGCATT
CCGCTCAAGG CCCTGAAGTG GATGCTGCAG GAACACGCGC CGCTGGCCGT GCGCCTGGAC
GGCAGCCTGT TCCAGCTGCG CTGGATGGCG CAGATGCTGC GCAACTGCTC TGCCCAGCGC
TACGCCGTCA ACAAGGAACG CATGATGCGC GTGGCCGAGT ACAGCCGCAG CTGCCTGCAG
CAGTTGCGCG CCGACACCGG CATCGCCTAC GAGCAGCGCA CCGGCGGCAC CTTGCAACTG
TTCCGCACCC AGGCCCAGCT GGACGCCGTG GAGCGCGACG TGGCCGTGCT GCGCGAATGC
GCCGTGCCCT TCGAGCTGCT GGACCGCGAC CAGCTCGCCC AGGTGGAGCC CGCCCTGGCC
CAGGCGCGCG ACCGGCTGAC GGGCGGCCTG CGCCTGCCCA AGGACGAGAC CGGCGACTGC
CACCGCTTCA CCAATGAATT GGCCCGCATC GCCACCGGCC TGGGCGTGGA GTTGCGCTTC
AACCAGAACG TGGATGGCCT GGTGGTCGAA GGCGGCCGCA TTGCCGGCGT GCGTGTGAAT
GGCGAACTGC TGACCGCCGA CCGCTACGTG ATGGCCTTCG GCAGCTACTC GCGCCAGGCG
CTGGAGCCGC TGGGGCTGGA CCTGCCCGTC TACCCCGTCA AGGGCTATTC GCTCACCGTG
CCGCTGGGCA ACCCGGCGCT GGCGCCGCAG TCCACCGTGC TGGACGAGAC CTACAAGATT
GCCGTCACCC GCTTTGACGA CCGCATCCGC GTGGGCGGCA TGGCCGAGCT GGGCGGGTTC
GACCTGCGCC TGGACCCGCG CCGCCGCGCC ACGCTGGAGC TGGTGGTCAA CGACCTGTTC
CCGGGCGGCG ACGTGGCGCG CGCCAGCTTC TGGACCGGGC TGCGGCCCAT GACGCCGGAC
GGCACGCCCA TCATCGGCGC CACGCGCTAT GCCAACCTGT TCCTGAACAC CGGCCACGGC
ACGCTGGGCT GGACCATGGC CTGCGGCTCG GGCCGGCTGA TCGCCGACCT GATCACCGGC
CGCAGCCCGG AAATCAGCAC CGACGGCCTG GCCCTGGACC GCTACACGCA CCGGCCGGCC
CGGCACCTGG GGGGCAGCTC CACGCCCGTG TCCGCCTGA
 
Protein sequence
MKVLVLGGGV IGVTSAYYLA RAGAEVTVLD RQDAPASETS FANAGQVSPG YSTPWAAPGI 
PLKALKWMLQ EHAPLAVRLD GSLFQLRWMA QMLRNCSAQR YAVNKERMMR VAEYSRSCLQ
QLRADTGIAY EQRTGGTLQL FRTQAQLDAV ERDVAVLREC AVPFELLDRD QLAQVEPALA
QARDRLTGGL RLPKDETGDC HRFTNELARI ATGLGVELRF NQNVDGLVVE GGRIAGVRVN
GELLTADRYV MAFGSYSRQA LEPLGLDLPV YPVKGYSLTV PLGNPALAPQ STVLDETYKI
AVTRFDDRIR VGGMAELGGF DLRLDPRRRA TLELVVNDLF PGGDVARASF WTGLRPMTPD
GTPIIGATRY ANLFLNTGHG TLGWTMACGS GRLIADLITG RSPEISTDGL ALDRYTHRPA
RHLGGSSTPV SA