Gene Daci_3107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3107 
Symbol 
ID5748691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3424977 
End bp3425612 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content70% 
IMG OID641298210 
Productnitroreductase 
Protein accessionYP_001564130 
Protein GI160898548 
COG category[C] Energy production and conversion 
COG ID[COG0778] Nitroreductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.100184 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCTT CTGAACTTTC CTCCATGCCC ATCGGGCAGG CCATCGCTTC GCGCATTTCC 
GCAGACCGTT TCGAGCCGGG CTGCGCGCTG GCCGATGAGA CGCTGGCCGC GCTGGTGGCC
CAGGCCTCGC TGTCCCCGTC GGCCTACAAC CTGCAGAACT GGCGCTTCAT TGCCGTGCGC
ACACCCGAGG CCAAGGCGCG CCTGAAGGCC GCCGCCTATG GGCAGCAGAA GGTGGAGGAC
GCCTCTGCCG TCTTCATCGT CTGCGGCACG CTGGCCGCGC ATGCGCGGCT GGCGGAGTTC
TTGCAGCCCA GCGTGGACGG CGGGCTGATG AGCCAGCGCA CGGCCGATGG CTGGGTAGCC
CAGGCCCAGG CCGCGCACGC GGACAACCTG CAGCTGCAGC GCGACGAGGC CGTGCGCTCA
GCCTCGCTGG CGGCCATGAC GCTGATGCTG TCCGCCCAGG GCCTGGGGCT GGCCAGCTGT
CCCATGGTGG GGTTCGATGC GGAACTGCTG GCAGCGGGCT TTGGCCTGCA GGCCCACGAA
CTGCCCGTGA TGCTGGTCGC CGTGGGCCAC GCGGCAGGCA CGCCACGCCC CCAGAAGGCG
CGCAGGCCGC TGGCCGACAT CCTGGCCTAT GCCTGA
 
Protein sequence
MTSSELSSMP IGQAIASRIS ADRFEPGCAL ADETLAALVA QASLSPSAYN LQNWRFIAVR 
TPEAKARLKA AAYGQQKVED ASAVFIVCGT LAAHARLAEF LQPSVDGGLM SQRTADGWVA
QAQAAHADNL QLQRDEAVRS ASLAAMTLML SAQGLGLASC PMVGFDAELL AAGFGLQAHE
LPVMLVAVGH AAGTPRPQKA RRPLADILAY A