Gene Daci_3064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3064 
Symbol 
ID5748648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3374236 
End bp3376395 
Gene Length2160 bp 
Protein Length719 aa 
Translation table11 
GC content69% 
IMG OID641298167 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001564087 
Protein GI160898505 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.981244 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATCC AAAGACTTTC GCGCACGGCA GTTGCGCATG CCGCCCTGCT TGCCCTGTGC 
GGCGCAGCCC ACGCCCAGGC CCAGCCTGAA AATGTTCCCG AGGCCACGCT CGCCCCGGTC
ACCGTGAACG CAGGCGCCGA GAAGGAAAAT CCCACCGGAG CCGTGGTGGG CTTCACCGCA
AAGCGCGCCA TTTCGGCCAC CAAGACCGAC ACGCCGCTGA TCGAGACGCC CCAGGCCATC
AGCGTGGTCA CGCGCGACCA GTTCGAGGCG CAGGGCGTGC AGACGCTGCG CCAGACCACG
GCCTACAGCG CGGGCGTGGT GTCCAACTAT TTCGACAGCC GGGTGGACAG CTTCTCGGCA
CGCGGCGGCA GCGTGAGCCA GTACCAGGAC GGGCTGCTGC GCACCTACGG CACCTACAAC
ACCAGCCGCC CCGACCCCTA CACGCTGGAG CGCGTGGAGT TCCTGCGCGG ACCCTCTTCC
GTGCTCTACG GCCAGGGCAG CGTGGGCGGC GTGCTCAACC TGACCAGCAA ACGCCCGCAG
GCCGAGGCGC TGCGCGAGGT TCAGGTGCAG ATGGGCAGCT ACGGGCGCAA GCAGATCGCC
ACCGACCTGA CCGGCGCCGT CACCGAAGAC GGCCAGTGGC TGTACCGCCT GGTGGCCGTG
GGCCGGGAAA GCGGCACCCA GGTGGACCAT GTGAACGACG ACCGCCTGGT CATCGCGCCC
AGCCTGACCT GGCGGCCCAG CGCCGATACC TCACTCACGC TGCAGGCGCT CTACCAGAAA
GACAAGAGCG GCTCGCTGAT CGGCTTCTTC CCCTGGCAGG GCACTCGCCT GCCCAGCCCC
TACGGCCAGA TTCCCACCAG CACCTTCATC GGCGAGCCCG GCTGGGACTC GTTCGACACA
GAGAACAAAT CCTGGGGCTA CCTGTTCAGC CACCGTCTGA ACGCGGACTG GACCGTGCGC
CAGAACCTGC GGCGCACCAT CAGCGACGTG GACTACCGCT CCATATACAC CAGCTTCACC
GCCATCCCGG GCCAGGGCCG CCCTGCGCGC CCGGTCTTCA ACCCCGACAA CCGCAGCGTC
TACCGCGATG CCTCCTGGCA GGTCAACGGC GGGCGCATGC TGGTGATCGA CACGCAGCTC
GAAGGCCGGC TGCGCTGGGG CACGGCCGAG CACACCGTGC TGGCCGGCAT GGATGCGCAG
CGCAACAGCA CCAGCCAGTC CACCTGGCGC GGCCTGACCG CGCCGTTTGA CGTCTACAAC
CCCGTATACG GCAACTTCAC GCCGCCCACG GCCTCGCAGC TGGTGCGCCA GCCGGGCGTG
TCGCAAAAGC AATTGGGCTT CTACGCCCAG GACCAGATCA AGTGGGGCCG CTGGACCGCC
ACCCTGGGCC TGCGCCACGA CAGCGCGCAG ACCGATACCG AAGGCCGGCC CGCCTCCGCC
GTGGACGAGA AGGCCTGGAC CAAGCGCGCA GGCGCCACCT ACCAGATGGA CGGTGGCTGG
GCGCCCTACC TGGGCTACTC CGAGTCCTTC CAGCCGCTGG GCGGCGTGGA TGTCTACGGC
ACGCCCTACA AGGCCCAGCG CGGCGAGCAA TGGGAAGCCG GCGTGAAGTG GCAGCCGCCG
GGCCAGGGCC TGTCGGCCTT TGCCGCCGTC TACACGCTGC GCGAGAAGAA CCGCAAGACC
ACCGACCCGG CCAACCCGCT CAACAGCCTG CAGATCGGCG AGGTCAAGGT CAACGGCTTC
GAGGCCGAGC TCACCGCCAG CCTGGCCCGC CACTGGGACG CCACCCTGGC CTATGCGTAC
ACCGACGCCG TCATCTCGCG CAGCAATGGC GGCGACCAGG GCCAGCGCGT GACCAGCGTG
CCGCGCCACA CGGCGTCGGC CTGGCTAACC CACCGCTTTG CCAGCGAAGG GCGCGGCGGC
TGGAGCCTGG GTGCCGGCGT GCGCTATACA GGTTCGCAGT GGACGGGCAC CAGCCTGGTG
GACACGCCTT CGGCCACCCT GCTGGACGCC ATGGTGTCCT ATGACGCCGG CCCATGGCGC
CTGGCCTTCA ACGTGGTCAA CCTGACCGAC AAGGTGCAGA TCACGCAGTG CCTGGCACGC
GGCGACTGCT TCTACGGCCA GCGGCGCACC TTTGCGGTGA CGGGAACGCA CCGCTTCTGA
 
Protein sequence
MPIQRLSRTA VAHAALLALC GAAHAQAQPE NVPEATLAPV TVNAGAEKEN PTGAVVGFTA 
KRAISATKTD TPLIETPQAI SVVTRDQFEA QGVQTLRQTT AYSAGVVSNY FDSRVDSFSA
RGGSVSQYQD GLLRTYGTYN TSRPDPYTLE RVEFLRGPSS VLYGQGSVGG VLNLTSKRPQ
AEALREVQVQ MGSYGRKQIA TDLTGAVTED GQWLYRLVAV GRESGTQVDH VNDDRLVIAP
SLTWRPSADT SLTLQALYQK DKSGSLIGFF PWQGTRLPSP YGQIPTSTFI GEPGWDSFDT
ENKSWGYLFS HRLNADWTVR QNLRRTISDV DYRSIYTSFT AIPGQGRPAR PVFNPDNRSV
YRDASWQVNG GRMLVIDTQL EGRLRWGTAE HTVLAGMDAQ RNSTSQSTWR GLTAPFDVYN
PVYGNFTPPT ASQLVRQPGV SQKQLGFYAQ DQIKWGRWTA TLGLRHDSAQ TDTEGRPASA
VDEKAWTKRA GATYQMDGGW APYLGYSESF QPLGGVDVYG TPYKAQRGEQ WEAGVKWQPP
GQGLSAFAAV YTLREKNRKT TDPANPLNSL QIGEVKVNGF EAELTASLAR HWDATLAYAY
TDAVISRSNG GDQGQRVTSV PRHTASAWLT HRFASEGRGG WSLGAGVRYT GSQWTGTSLV
DTPSATLLDA MVSYDAGPWR LAFNVVNLTD KVQITQCLAR GDCFYGQRRT FAVTGTHRF