| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3056 |
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| Symbol | |
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| ID | 5748640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3363415 |
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| End bp | 3364872 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641298159 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001564079 |
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| Protein GI | 160898497 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.111107 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGAC CTCCCGTCTT GCTCTGCAAC TGCCCATGGC GATGCTTGCT GCTCTGTATA
GCTGGCTGCC TGGCCGCGCT ACTGAGCGTG GTACCGATGT GCACTCTGGC ATCGACGGAC
ATCTTTCAGG CTGAGGAGAG GGTTGTTCAG CCCCTAACAG CCATCGCACG GCCTGGATCG
CCAACACCCT GCATCTTTGC TGCGATGCCC GACCCTTTGC CTGTCGCCGA GGCCGTGGAA
CGCATGCTTT GCAATGATCC CAACGTGCGT CTGGCATGGG CTCAAACCCG CGCGCAAGCA
GCCCAGGTCG GACTCAAACA GTCGGCTTAC TTGCCAAGGC TGAACGCACA ACTAGACGCC
AGACAGGCAC ACAGCGAGAT CCAGCGCGCA AGCGGTGGCT CGGGCGGCAG CAGGCAAACC
TACACCGGCG CCGTCAACCT CCATTGGGTG GTGCTGGATT TCGGAGCCCG CGAAGCAGCG
CTGGAGACTG CACGACAGCT GTTGCGCGCC GCAAATGCCT CCGGGCAGGC TGCTGTACAG
CAAGCATTCC TGCGCTCGGT GCAGTTGTAC TATCAGGCGC AGTCGCTCCA AGAACGCCTG
CAAGCGGCGC GGCAGGTTCT GGATCTGGCG GATGAAAACC ACCAGGCGGC AAACGCCAAG
TACCAGGTGG GGGCAGCAGC CTTGTCCGAC ATGCTGCAGG CGAAGACGGC ACTATCTCGA
GCCAGCCTCA GAGTGACGCG TATCCAGGGT TCGCTTGAAC AGGTACTCGG CGATATGGCC
TTGTTGATGG GGCAATCTGC AGATCTTCCG CTGCGCGTCG AGACCCTTTC TGCTCCTCAG
CCAGACTTGA GTTTCGTTGT TGCACTGGAC GAACTACTGG CAATCGCCCA GCAGACGCAC
CCCACCCTGA GGGCCGCACA GGCCAGACTG AGTGCCGCGC AGTCGGCTGT GCAAGAAAGC
CGAGCTTATG GTCGGCCCAA TGTCGCGCTG ACAGCGAGCA TCAACCGTTC GCGCAGCATG
CAACCGCCAG CCTTGGGCTC TGACTTCCGT CAGTCGGATA GCAGCCTGGG CCTTCTGCTG
AACATCCCGC TGTTTGACGG GATGGAGCGC GAATACCGCA TACGCGATGC GCAAGCCCGT
GCAGCTGAAA GCACAGCAGC CATGGAAGAC ACACTTCAAC GGATTTCACG CGACGTATGG
CTTAACTACC AAACGCTGAA GACCGAGACC GAAAGCCTTC AACGTGCCAG TGAAATCGAA
GACCAGTCGC GACAGGCGCT TGAAGTCGTT CGAGGCCGGT ACCGTGCCGG CGTGGGCAAC
ATGACGGAAT TGCTCAACGC CATGAATGCC TTCACTGATG CGCAAGAACT TCATATCTCG
ACATTGAACA GTTGGAGGAT CTCTCGGATA GGCTTGGCCG GCAGCCTGGG CCGATTGGGC
TTTTGGTCGC TGGATTGA
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| Protein sequence | MSRPPVLLCN CPWRCLLLCI AGCLAALLSV VPMCTLASTD IFQAEERVVQ PLTAIARPGS
PTPCIFAAMP DPLPVAEAVE RMLCNDPNVR LAWAQTRAQA AQVGLKQSAY LPRLNAQLDA
RQAHSEIQRA SGGSGGSRQT YTGAVNLHWV VLDFGAREAA LETARQLLRA ANASGQAAVQ
QAFLRSVQLY YQAQSLQERL QAARQVLDLA DENHQAANAK YQVGAAALSD MLQAKTALSR
ASLRVTRIQG SLEQVLGDMA LLMGQSADLP LRVETLSAPQ PDLSFVVALD ELLAIAQQTH
PTLRAAQARL SAAQSAVQES RAYGRPNVAL TASINRSRSM QPPALGSDFR QSDSSLGLLL
NIPLFDGMER EYRIRDAQAR AAESTAAMED TLQRISRDVW LNYQTLKTET ESLQRASEIE
DQSRQALEVV RGRYRAGVGN MTELLNAMNA FTDAQELHIS TLNSWRISRI GLAGSLGRLG
FWSLD
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