Gene Daci_3053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3053 
Symbol 
ID5748637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand+ 
Start bp3359152 
End bp3359841 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content69% 
IMG OID641298156 
ProductGntR family transcriptional regulator 
Protein accessionYP_001564076 
Protein GI160898494 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.784851 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.195009 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGAGA TCATCGAGAT TTCGCGGCTT GCCCTGCATG ACCAGGTGGC GGCTCGGCTG 
CGCACCTGGC TGGTGGAGGG GCGCATACCG CCCGGTGCCA AGCTCAACGA GCGCGCGCTG 
TGCGAGCAGT TGCGCGTCTC GCGCACGCCG CTGCGCGAGG CCATCAAGCT GCTGGCCTCC 
GAAGGGCTGG TGGACCTGGT GCCCAACCGC GGCGCCGTGG CCGTGCGCCT GGGCGAGGCC 
GATGTGCTGC AGACCTTCGA GGTGCTGGCG GGGCTGGAGG GCATGTCGGG CGAGCTGGCC 
GCGCAGCGCA TCAGCGAGCA GCAACTGGCC GAGGTGCGGG CCCTGCACTT CGAGATGCTG 
GCCAGCCATG CGCGCCAGGA CCTGTCCGGC TACTACCGGC TCAATGCGCT GATCCACTCG 
GCCATCAACC GCGCCGCCGC CAACCCCGTG CTGGCCGAGA CCTATGGCCG CATCAACGCC 
CGCGTGCAGT CGCTGCGCTT TCGCACCAAC CAGGACGCGG CCAAGTGGAA ACGCGCCGTC 
CAGGAACACG AACGCATGCT GGAGGCGCTG CAGGCGCGCG ACGCCGCCGC GCTGCGCCAG 
GTGCTGGTGG CCCACCTGGA GCACAAGCGC GACACCGTCA TCGCCCTGCT CAAGGCAGGC 
CAGATCTACC CACGAACCAT GAACGAATGA
 
Protein sequence
MAEIIEISRL ALHDQVAARL RTWLVEGRIP PGAKLNERAL CEQLRVSRTP LREAIKLLAS 
EGLVDLVPNR GAVAVRLGEA DVLQTFEVLA GLEGMSGELA AQRISEQQLA EVRALHFEML 
ASHARQDLSG YYRLNALIHS AINRAAANPV LAETYGRINA RVQSLRFRTN QDAAKWKRAV 
QEHERMLEAL QARDAAALRQ VLVAHLEHKR DTVIALLKAG QIYPRTMNE