Gene Daci_3044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3044 
Symbol 
ID5748628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3347162 
End bp3348853 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content71% 
IMG OID641298147 
ProductATP-dependent DNA ligase 
Protein accessionYP_001564067 
Protein GI160898485 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR01413] Dyp-type peroxidase family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0164872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGATT TCGCCGCCCT CTACCGCGCG CTGGACGCCA GCACCGCCAG CCGCGACAAG 
CAGGCCGCGC TGCAGGCCTA TCTGCGCGCC ACCGCGCCTG CCGATGCGGC CTGGGCCGTC
TATTTCCTGG CCGGTGGCAA GCCACGCCAG CTGGTGCCCA CCAAGGTCTT GAAGGAGCTG
GCGCGCGAGG CTGCCGGCCT GCCCGAATGG CTGTTCGACG AAAGCTACGA GGCCGTGGGC
GACCTGGCCG AAACCATTGC GCTGCTGCTG CCGCCACCCG GTGACGCGCA CGACCTGGGC
CTGGCCGCCT GGGTCACGGA CCACCTGCTG CCGCTGCGCG GCATGGCGCC CGAGGCGCTG
GCGGACACGC TGCGCGCGCA GTGGGCGCGG CTGGCGGCCG ATGAGCGGCT GGTCTACTTC
AAGCTGATCA CTGGTGCCTT CCGGGTCGGC GTGTCGCGGC TGCAGGTCAC GCAGGCGCTG
GCGGCCGTCA GCGAGGTGGA TGCCAAGCGC ATCGCCCAGC GGCTCATGGG CTACACCCAC
ATCGGCGCGC GGCCCGGGGC GGCCGACTAC CTGCGGCTGG TGGCGGGGGA GGAAGAGGGC
GATGACGCGC ATTCGGGCGA AGCCCGGGGC CACCCCTATC CCTTCTTCCT GGCCCATCCG
CTGCAGTTGC CGCTGGAGCA GTTCGACGCC GTGCTCGGCC CGCCGTCCCA ATGGGTGGTG
GAGTGGAAAT GGGACGGCAT ACGCGCCCAG ATCGTGCGGC GCGGCAGCGG TGACGCGCTG
GGCACCTGGA TCTGGTCGCG CGGCGAGGAA CTGGTGAGCG AGCGCTTCCC CGAGCTGCAG
GCCATGGGCG ATGCCTTGCC TGCGGGCACC GTGATCGACG GCGAGATCGT CGTCTGGGCC
GCGCAGCAGG GCGAGGCGCC CGCCCATGTG CGCCCCTTTG CCGACCTGCA AAAGCGCATA
GGCCGCAAGA CCCTGGGCCC CAAGCTGCTG CGCGAGCTGC CCGTGGTGCT GCTGGCCTAT
GACTTGCTGG AGGAGGGCGG CCAGGACCTG CGCGCGCTGC CCCAGCATGA ACGGCGCGCA
AGGCTGGAGC GGCTGGTGGC CTTGGTGGCG CATCCGGCGC TGCTGCCCAG TCCGGTCCTT
GCGGGCGATA GCTGGCAGGC CCTGGCCGAA CTGCGCGAGC AGGCCCGTTC CCTGGGCGTG
GAGGGCATGA TGCTCAAGGC CCGCGATGCC GCCTACGGCG TGGGCCGCAC CAAGGACAGC
GGCGTGTGGT GGAAGTGGAA GATCGATCCG CTGAGCGTGG ACGCCGTGCT CATCTATGCA
CAGCGCGGCC ACGGCCGTCG CGCCAGCCTC TACAGCGACT ACACCTTTGC TGTCTGGAAC
GCGCCGCCCG GCACCGAGGG CCGCGCCCTC GTGCCCTTCG CCAAGGCCTA TTCGGGTCTG
ACCGATGCCG AAATGGCGCG CGTGGACGCC GTCATCCGCA AGACCACGGT GGAGAGCTTC
GGCCCCGTGC GCAGCGTGCG GCCCACCCTG GTGTTCGAGC TGGGCTTCGA GGGCATTGCG
CGCAGCGCAC GCCACAAGAG CGGTATTGCC GTGCGCTTTC CGCGCATGCT GCGCTGGCGC
GAGGACAAGC CTGTGCAGGA GGCCGACTCC ATCGACACGC TGGCCGCCCT GCTGCCGCAT
TCCGACCCTT GA
 
Protein sequence
MKDFAALYRA LDASTASRDK QAALQAYLRA TAPADAAWAV YFLAGGKPRQ LVPTKVLKEL 
AREAAGLPEW LFDESYEAVG DLAETIALLL PPPGDAHDLG LAAWVTDHLL PLRGMAPEAL
ADTLRAQWAR LAADERLVYF KLITGAFRVG VSRLQVTQAL AAVSEVDAKR IAQRLMGYTH
IGARPGAADY LRLVAGEEEG DDAHSGEARG HPYPFFLAHP LQLPLEQFDA VLGPPSQWVV
EWKWDGIRAQ IVRRGSGDAL GTWIWSRGEE LVSERFPELQ AMGDALPAGT VIDGEIVVWA
AQQGEAPAHV RPFADLQKRI GRKTLGPKLL RELPVVLLAY DLLEEGGQDL RALPQHERRA
RLERLVALVA HPALLPSPVL AGDSWQALAE LREQARSLGV EGMMLKARDA AYGVGRTKDS
GVWWKWKIDP LSVDAVLIYA QRGHGRRASL YSDYTFAVWN APPGTEGRAL VPFAKAYSGL
TDAEMARVDA VIRKTTVESF GPVRSVRPTL VFELGFEGIA RSARHKSGIA VRFPRMLRWR
EDKPVQEADS IDTLAALLPH SDP