Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3044 |
Symbol | |
ID | 5748628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 3347162 |
End bp | 3348853 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641298147 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001564067 |
Protein GI | 160898485 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR01413] Dyp-type peroxidase family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0164872 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGGATT TCGCCGCCCT CTACCGCGCG CTGGACGCCA GCACCGCCAG CCGCGACAAG CAGGCCGCGC TGCAGGCCTA TCTGCGCGCC ACCGCGCCTG CCGATGCGGC CTGGGCCGTC TATTTCCTGG CCGGTGGCAA GCCACGCCAG CTGGTGCCCA CCAAGGTCTT GAAGGAGCTG GCGCGCGAGG CTGCCGGCCT GCCCGAATGG CTGTTCGACG AAAGCTACGA GGCCGTGGGC GACCTGGCCG AAACCATTGC GCTGCTGCTG CCGCCACCCG GTGACGCGCA CGACCTGGGC CTGGCCGCCT GGGTCACGGA CCACCTGCTG CCGCTGCGCG GCATGGCGCC CGAGGCGCTG GCGGACACGC TGCGCGCGCA GTGGGCGCGG CTGGCGGCCG ATGAGCGGCT GGTCTACTTC AAGCTGATCA CTGGTGCCTT CCGGGTCGGC GTGTCGCGGC TGCAGGTCAC GCAGGCGCTG GCGGCCGTCA GCGAGGTGGA TGCCAAGCGC ATCGCCCAGC GGCTCATGGG CTACACCCAC ATCGGCGCGC GGCCCGGGGC GGCCGACTAC CTGCGGCTGG TGGCGGGGGA GGAAGAGGGC GATGACGCGC ATTCGGGCGA AGCCCGGGGC CACCCCTATC CCTTCTTCCT GGCCCATCCG CTGCAGTTGC CGCTGGAGCA GTTCGACGCC GTGCTCGGCC CGCCGTCCCA ATGGGTGGTG GAGTGGAAAT GGGACGGCAT ACGCGCCCAG ATCGTGCGGC GCGGCAGCGG TGACGCGCTG GGCACCTGGA TCTGGTCGCG CGGCGAGGAA CTGGTGAGCG AGCGCTTCCC CGAGCTGCAG GCCATGGGCG ATGCCTTGCC TGCGGGCACC GTGATCGACG GCGAGATCGT CGTCTGGGCC GCGCAGCAGG GCGAGGCGCC CGCCCATGTG CGCCCCTTTG CCGACCTGCA AAAGCGCATA GGCCGCAAGA CCCTGGGCCC CAAGCTGCTG CGCGAGCTGC CCGTGGTGCT GCTGGCCTAT GACTTGCTGG AGGAGGGCGG CCAGGACCTG CGCGCGCTGC CCCAGCATGA ACGGCGCGCA AGGCTGGAGC GGCTGGTGGC CTTGGTGGCG CATCCGGCGC TGCTGCCCAG TCCGGTCCTT GCGGGCGATA GCTGGCAGGC CCTGGCCGAA CTGCGCGAGC AGGCCCGTTC CCTGGGCGTG GAGGGCATGA TGCTCAAGGC CCGCGATGCC GCCTACGGCG TGGGCCGCAC CAAGGACAGC GGCGTGTGGT GGAAGTGGAA GATCGATCCG CTGAGCGTGG ACGCCGTGCT CATCTATGCA CAGCGCGGCC ACGGCCGTCG CGCCAGCCTC TACAGCGACT ACACCTTTGC TGTCTGGAAC GCGCCGCCCG GCACCGAGGG CCGCGCCCTC GTGCCCTTCG CCAAGGCCTA TTCGGGTCTG ACCGATGCCG AAATGGCGCG CGTGGACGCC GTCATCCGCA AGACCACGGT GGAGAGCTTC GGCCCCGTGC GCAGCGTGCG GCCCACCCTG GTGTTCGAGC TGGGCTTCGA GGGCATTGCG CGCAGCGCAC GCCACAAGAG CGGTATTGCC GTGCGCTTTC CGCGCATGCT GCGCTGGCGC GAGGACAAGC CTGTGCAGGA GGCCGACTCC ATCGACACGC TGGCCGCCCT GCTGCCGCAT TCCGACCCTT GA
|
Protein sequence | MKDFAALYRA LDASTASRDK QAALQAYLRA TAPADAAWAV YFLAGGKPRQ LVPTKVLKEL AREAAGLPEW LFDESYEAVG DLAETIALLL PPPGDAHDLG LAAWVTDHLL PLRGMAPEAL ADTLRAQWAR LAADERLVYF KLITGAFRVG VSRLQVTQAL AAVSEVDAKR IAQRLMGYTH IGARPGAADY LRLVAGEEEG DDAHSGEARG HPYPFFLAHP LQLPLEQFDA VLGPPSQWVV EWKWDGIRAQ IVRRGSGDAL GTWIWSRGEE LVSERFPELQ AMGDALPAGT VIDGEIVVWA AQQGEAPAHV RPFADLQKRI GRKTLGPKLL RELPVVLLAY DLLEEGGQDL RALPQHERRA RLERLVALVA HPALLPSPVL AGDSWQALAE LREQARSLGV EGMMLKARDA AYGVGRTKDS GVWWKWKIDP LSVDAVLIYA QRGHGRRASL YSDYTFAVWN APPGTEGRAL VPFAKAYSGL TDAEMARVDA VIRKTTVESF GPVRSVRPTL VFELGFEGIA RSARHKSGIA VRFPRMLRWR EDKPVQEADS IDTLAALLPH SDP
|
| |