Gene Daci_3032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3032 
Symbol 
ID5748616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand+ 
Start bp3335029 
End bp3335706 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content74% 
IMG OID641298135 
Producthypothetical protein 
Protein accessionYP_001564055 
Protein GI160898473 
COG category[S] Function unknown 
COG ID[COG3342] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00540438 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.842366 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTTT CGATTGTGGG GCGCTGCGAG CGCACCGGGC AGCTGGGCGT GGCCATCAGC 
TCGTCCAGCA TTGCGGTGGG CGCGCGCTGC CCCTGGGTGC GCGCGGGCGT GGGCGTGGTG 
TCCACGCAGA ACATCACGCT GCCCGCCCTG GGCCCGCGCG TGCTGGACCT GCTGGAGCAG 
GGCGCCGACC CCCAGGCCGC GCTGCGCCAG GCGCTGGATG ACGGCAGTTG GCCCCAGTAC 
CGCCAGGTTA CCGTGGTGGA CGCGCAAGGC CGCACCGGCG TCTTCAGCGG CAGCCAGGCC 
CTGGGCATCT TCACCAGCGC CGTGGGGCGG CAGTGCGTGG CGGCCGGCAA CCTGCTGGCC 
AGCGAGCGCA CCATCGAGGC CATGGTGCCG GCCTTCGAGC GCAGCGCCGA CCTGCCGCTG 
GCCGAGCGCC TGCTGGCCGC CATGCAGGCC GCCATGGCCG CGGGCGGCGA GGCCGGGCCC 
GTGCATTCGG CCGCGCTCAA GGTGGCGGGC GAGCACAGCT GGCCCATGGC GGACCTGCGC 
GTGGACTGGT CGGAGCACGA TCCCATCGGC GCGCTGCAAG GCCTCTGGGC CGCCTACGCG 
CCGCAGATGC AGGACTACCA GACACGCGCC ATCGATCCCA GGGCCGCGCC CAGCTATGGA 
GTGCCGGGCG ACGAGTGA
 
Protein sequence
MTFSIVGRCE RTGQLGVAIS SSSIAVGARC PWVRAGVGVV STQNITLPAL GPRVLDLLEQ 
GADPQAALRQ ALDDGSWPQY RQVTVVDAQG RTGVFSGSQA LGIFTSAVGR QCVAAGNLLA 
SERTIEAMVP AFERSADLPL AERLLAAMQA AMAAGGEAGP VHSAALKVAG EHSWPMADLR 
VDWSEHDPIG ALQGLWAAYA PQMQDYQTRA IDPRAAPSYG VPGDE