| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3004 |
|---|
| Symbol | smpB |
|---|
| ID | 5748588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3308487 |
|---|
| End bp | 3309008 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641298107 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_001564027 |
|---|
| Protein GI | 160898445 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.034117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTATGGAG AGCTTTCATC TCCAGGTTTT CGCCGCATCT ATTACTCCAT GGCCAAGAAA
CCTGAAACAC AGTCGCGCAT CGCCGACAAC AAAAAAGCCG CGTTCAACTA CTTCTTCGAG
GAACGTTTCG AGGCCGGCAT CGTGCTGCAC GGCTGGGAAG TGAAGGCACT GCGCAGCGGC
AAGGTGCAGT TGACCGACGG CTACGTCATC GTCAAGGACG GCGAGCTGTT CCTGCTCGGC
TGCCAGATCA ACCCGCTCAA GACCGCCTCC ACCCACGTCA ACCCCGACGC GGCGCGCATC
AAGAAGCTGC TGCTCAAGAA GGACGACATC CTGCGCCTGA TCGGCAAGGT CGAGCAAAAG
GGCTTCACGC TGGTGCCCAT CAACCTTCAC TGGAAGAACG GTTTCGTCAA GTGCGACATC
GCCCTTGCCA AGGGCAAGGC CGAGCACGAC AAGCGCGACG TGATCAAGGA CCGCGAAGGC
AAGCGCGAGG TCGAGCGCGC CATGAAGAGC TTCAACCGTT GA
|
|---|
| Protein sequence | MYGELSSPGF RRIYYSMAKK PETQSRIADN KKAAFNYFFE ERFEAGIVLH GWEVKALRSG
KVQLTDGYVI VKDGELFLLG CQINPLKTAS THVNPDAARI KKLLLKKDDI LRLIGKVEQK
GFTLVPINLH WKNGFVKCDI ALAKGKAEHD KRDVIKDREG KREVERAMKS FNR
|
|---|
| |