Gene Daci_2899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2899 
Symbol 
ID5748480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3180184 
End bp3182253 
Gene Length2070 bp 
Protein Length689 aa 
Translation table11 
GC content63% 
IMG OID641297999 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001563922 
Protein GI160898340 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.27988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.214281 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTCG CTTGCTCGGC AAGCTGGGGG CAGGCCTCCA CAACCCTGGA CACCGTCACC 
GTGCGCTCAT CCGGCGACAG CGCCCTGGAG CGCCCGCTGG CCACCGGCAG CCGACTGGAT
CTCAGCGCAC GCGATACGCC CGCCAGTGTC GAAGTGATCA CGCGCGAGCA ACTGCAGGCC
AGGGGCGACA CTTCGCTGGT CGATGCAATC ACCCGCTCCA CGGGTATCAC CAGCCTGGGG
CATCCGGGCA ACAGCGGCAG TTCGCTGTCG GCACGGGGCT TCACCGACAC CACGTCGGTC
ATGCGTTTGT ATGACGGCAC TCGCCAATAT GGCGGTGTGG GCGTGAGTTT TCCCTTCGAC
ACCTGGTCCA TAGACCGCAT CGAAGTGCTG CGTGGACCGG CTTCCGTGAT CTATGGCGAT
GGCGCCATCG GAGGGGTCAT CAATGTGATT CCCAAGAAGC CCACACGCAG TCCGATACGC
AACGAGGTCC AGGCCACGGT GGGCACCGAC GGAAAACGCG GCCTGGCCTT TGGCAGCGGC
GGCGCAATCG ATGAGCACTG GTCCTACCGT CTGGATGCCA GTGGAGACCG CTCCGACGGA
TGGGTTGACC GGGGTGATTC CAGCAACCGC ACCCTCTCCG CAGCCTTGCG ATGGGATCCG
GTGCAGGACT TCAGCGTGCA GCTGTCCCAC GCACTGGGCC GGCAAAAGCC CATGCGCTAC
TTCGGCACGC CGTTGATCAA TGGAGTTCAG GATCCGGCGG TGCGCGAACG CAACTACAAC
GTGGCCGACA GCCGCATCCA GTACAAGGAC CGCTGGACCG AACTGGCGGC GCAGTGGACG
CCCTCCAGCA ACGTGATCGT GCGCAGCAAG CTCTATCACA TAGCCAGCGA CCGCTATTGG
CGCAACGCCG AGACCTACCT GTACAACGCA TCCACCGGCC TGATCGACCG ATCCGGAAAC
ACCGAGATCG CCCATGACCA GACGCAGACC GGCAACACCA CGGATGCGAC CTTCAGCGGC
AGTCTCTTCG GCCGCAAGAA CCAGGTGTCC CTGGGCTTCG ATGTCAACCG CGCGGCATTC
CAGCATTCCA ACAACACCTA TGCGGGCAGC TCCGGTCCGG TGGACCCCTA CAACCCCGAT
CCCGGTCAAT TCACCAGCTC CATTCCCTTC ATTCCCCGCT ATCGCAACAA GGCCGAGCAA
TATGCGCTGT TCGCCGAGGA CCGCCTGGAG ATGACGGACC GCTGGTCATT GGTGGCCGGT
GCGCGGTTTG ACCATGCAAA TCTCTCGCGC CAGGACCTGG TGGCCGGGAC GCAGGCCTTC
AAGCGCAGCT ACTCCAATGC GGGGTGGCGC TTGGGATCGG TCTACCAACT CCACCCCGGC
CTGTCACTGT ATGCCCAGGC ATCCAAGGCG GCGGATCCGG TGAGCGGCCT GCTGATGCTG
TCTGCAGCCA ACGCCGCTTT CGACGTGTCC ACAGGGCGGC AGTTCGAAAT CGGCCTCAAG
CAATCGTTCT GGGAAGGCAA GGGCGACTGG ACGCTGGCGA TGTACTCCAT CACCAAGAAC
AATCTGCTCA CGCGTGACCC TTCCAACCCC GCGCTGCGCA TCCAGGTGGG GCAGCGGTCA
TCCAAAGGCA TGGAGAGCAC CCTGTCGATG CAGGTCGCCA AGACGGTTCG GCTGGATGCC
AACGTGGCCT TGCTCAAGGC GCGGTACGAC GACTTCAGCG AGTCGGTTGG CGGTGTCACC
GTGTCCCGCA ATGGCAACGT GCCCACCGAT GTGCCTGAAC GTGTCGCCAA TGCCTGGGTG
GGCTGGAACC TCGCTCCGAA CTGGACACTG TCAGGAGGGC TGCGCCATGT CGGCAAACGC
TATGCCGACA ACGCCAATAC CTTGAAGCTG GGGGCGTACA CCACCTTCGA TATGGCACTG
CAATGGAAGG CCACCGCGGA TACCACGCTG ACGCTGCGCG GGTTCAACGT TCTGGACAAG
CACTATTTCT CCACGGCCTA CTACACCACG ACGCAATGGC TGGTGGGCGA GGGCCGGCGC
GCGGAGATCA CGTTGCACCA TCGCTTCTGA
 
Protein sequence
MAFACSASWG QASTTLDTVT VRSSGDSALE RPLATGSRLD LSARDTPASV EVITREQLQA 
RGDTSLVDAI TRSTGITSLG HPGNSGSSLS ARGFTDTTSV MRLYDGTRQY GGVGVSFPFD
TWSIDRIEVL RGPASVIYGD GAIGGVINVI PKKPTRSPIR NEVQATVGTD GKRGLAFGSG
GAIDEHWSYR LDASGDRSDG WVDRGDSSNR TLSAALRWDP VQDFSVQLSH ALGRQKPMRY
FGTPLINGVQ DPAVRERNYN VADSRIQYKD RWTELAAQWT PSSNVIVRSK LYHIASDRYW
RNAETYLYNA STGLIDRSGN TEIAHDQTQT GNTTDATFSG SLFGRKNQVS LGFDVNRAAF
QHSNNTYAGS SGPVDPYNPD PGQFTSSIPF IPRYRNKAEQ YALFAEDRLE MTDRWSLVAG
ARFDHANLSR QDLVAGTQAF KRSYSNAGWR LGSVYQLHPG LSLYAQASKA ADPVSGLLML
SAANAAFDVS TGRQFEIGLK QSFWEGKGDW TLAMYSITKN NLLTRDPSNP ALRIQVGQRS
SKGMESTLSM QVAKTVRLDA NVALLKARYD DFSESVGGVT VSRNGNVPTD VPERVANAWV
GWNLAPNWTL SGGLRHVGKR YADNANTLKL GAYTTFDMAL QWKATADTTL TLRGFNVLDK
HYFSTAYYTT TQWLVGEGRR AEITLHHRF