| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2885 |
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| Symbol | |
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| ID | 5748466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3164009 |
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| End bp | 3168490 |
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| Gene Length | 4482 bp |
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| Protein Length | 1493 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641297985 |
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| Product | fimbrial assembly protein |
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| Protein accession | YP_001563908 |
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| Protein GI | 160898326 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.694358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.827989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGCA TTGCAAGTTG GAAAACCATG CATGGCCCGA TGGCCATGGC GCTGGCGCTG
TGGACGTGCG CACTGGCCCT GGCCAGTACG CCGGCGCAGG CCCAGGGGCG TGCGGACACC
GTGCTGTCCC AGATGCCGCT GTTCGTGAAC CAGGCGCTGG CGCCCTTGAA CATGCTGGTG
ATGGGGCGTG ACCACAAGCT GTACTACGAG GCCTACAACG ATGCCTCCGA CCTCAACGGA
GACGGTGTGA TCGATGTCGG GTACAAGCCG GACCAGATCG ACTACTACGG CTACTTCAAC
AACAACGTCT GCTACAGCTA TTCCAAGGGT GTTTTCGTGC CCTCGCAGGC AGCGACCGGA
AGCAACAGGA AAAAGTGCTC GAACAACTGG AGTGGCGACT TCCTGAACTA TCTGGCCACA
TCGCGCATGG ACGCCATACG CCGCGTGCTT TATGGCGGCA TGCGTGCGGA GGACACTGCT
TCGCGCACCG TTTTGCAGAC CGCCTACATT CCCAGGGATG CGCACAGCTG GGGCAAGGCC
TATGACCCTG CGCGGGATCT CGGGGTCTAC AGCATTTCGG ACTATGCGCC GCTGCGCCAG
CCGGCGGCCG GCACGCGCCA CCTGTTTGCC GTCACCACGC TGGGGGAGGC CGCTGGCGTC
ATCACGCAGT TGCGCGTGCT CAATGACTCC TCGTTCCAGA TCTGGGATTG GGTGTCCCAG
GAGGGCTTTG CAGGGCAGAG CAACTGTGCA GGCAGCAATT CGTGCGCGCG AGGCAGCAGC
AGGATCACCG ACTACAACCT GCTTGTGGAG GCCTGCTCCA GCAGCAATGT CCAGTTGCTC
GAGGCCAGCT GCAAGGCCTA TCCCAACGGC GGCAAGACCA TCTACAAGCC CACGGGGCTG
CTGCACGACT TCGGAGAGAA CGGGAAGATG TACTTCGGCC TGCTCACAGG CTCGTACGAG
AAAAACATCG CCGGCGGCGT GCTGCGTCGC AATATCAGCA ATTTCGCAGA GGAAGTCGAC
CCTCAGACGG GCCAGTTCAA GACGGGTGTC AATGGCGTGG TCGCCAACAT AGACCGCCAG
CGCCTGATCG GCTACACCGG CGGCAAATAC GTGGAATGCG GCTGGATCAC GTCCGGCCCC
ATCAGTTCGC TGGACAAGCC TTCGAAGTGC GCCATGTGGG GCAATCCCAT CAGCGAAATG
ATGTTCGAGA CCATGCGCTA TTTCGGCGGC GCGTCCCAGG CCCTCGACAT CTATGACTAC
GCCGCCGGCT CCTCCAAGGA TGCGTCCCTG GGCCTGTCCA AGCCCGCCTG GGAAACGCCC
TACAGGGCCA AGGCCGAAGG CGGGGGCGGC TACCAGTACT GCTCCCGTCC CGTCATGACG
GTGCTCAGCG ACATCAATCC CTCCTACGAC GGCAAGCTGC CCGGCAGCCG CTACGCGAGC
GTCGGCGCCA GCGCCCTCAA TGGCTTCAAT GTCTCTGACG AGGTGGCGGC CATCGGCTCG
GCCGAGCGCA TAGACGGGAA GAACTTCTTC ATCGGCCAGT CAACATCGGC CAATGCCGAC
CAGGCTCCTT CGGTCAAGAC CATTGCAGAC CTGTCCTGGG CGCGCGGCCT GTCTCCCGAG
GAGCCCAGCA AGGAAGGCAC CTACTATGCC GCCGGTGTGG CCCGTTTCGG CGCCAGGAAT
GCCATCTTCG GCAACAGCCA GGGCAAGAAT GCGTTGAGAA CCTACTCCGT GGCCATTGCG
TCACCGCTGC CGGAAATACG CTTTCCGATC GGCGGCAAAC GCTTTGTGAC CATTGCGCCT
TTTGCCAAGA CCGTCTCCGG CAGTGCCGGC GGCAGCACCG TGAACAATGC GGTCTTCACG
CCGACCAACC AGATCGTCGA CTACTACGTG GTCAACATTG CCAACACGGG CAAGGCGGAC
ATCGATGCCT CGGTCAATGG CGGGCGGCCT TATGCGGAGT TCCGCATCAA CTACGAGGAC
GTGGAGCAGG GCGCCGACCA TGACATGGAC GCCATCGCGC GCTACACGGT CGCGCTGCAG
GCCGATGGCA AGGTGAAGAT CGACATGGTG TCCGAATACG CCGCTGGCGG CCTGGGACAG
CACATGGGCT ATGTGATCTC GGGCACCACC AAGGACGGCA TGTACCTGGA GGTGCGTGAC
AAGGACACGG CCTCGGCCTA CTACGCCTAC AACACGCCCC CCAATCGCGA TCCGGGCTAC
TGCCGGGGCA GCATCTCGGC CCAGCAGCGC ACGGAATGCT CGAACCTGGG GCTCACGGCC
ACCCGCAGCT TCACTCCGGG CAATGCGACC GACGCGGGCA GCTTCCTGAA GGGGCCGCTG
TGGTATGCCG CCAAGTACGG TGTGCCGGAC CGCGACCCCT CCAAGATCAC GGGAGATCCG
GACAACTATT TTCTGGTGAC CAATGCCGGC ACGCTCAAGG AGCAATTGAC CAAGGCGTTC
AACGACATCC TGCAGAGCAT CAGTTCCGTG ACGGCGGTCA GCGTGGACAT GCCCACTGCG
ACACTGGGCG AAGGCGCCGA CCTGTACCGG ACCACGTTCG AGGTCCAGTA CTGGAGCGGC
GATGTCATCC GCGAGAAGCT CACCACCAGC GACAGAACGC TGGTCTGGAG CGCGGCGGAA
CTCCTGTCGG CGCGGTCCGC CGATGACCGC AAGATCTACT ACCCCAGCAG GACCGGCAGT
GCCGTGTCGC TGAGCCCTTT CACGTACTCC AGTCTCAGCG GGCAGCGCTC CGATGCGTCC
TGGCTGGCCG TGCTCAACAC GGACCCGGCC ACGAACTCCG CCGATGGCCA GGCAAAAAAG
CGCATCGAGT TCCTTCGTGG CGAGGTGCGC GATGACTTGC GCGTGCGCAA GCCCCTGGCC
AGCGGAAAGC CCAATGTGCT GGGCGATATC GTCAATTCCT CGCTGGTGCG GGTCAAGGGC
GGCCTGTACC GCGCCTCTGC CGCGGACAAG CTGGAGGGCA GCACCGCCTA TGCCGCCTTT
GCCGCGAAAC AGGCTGCCAA GGAGATGCTG TATGTGGGCG CCAACGACGG CATGCTGCAC
GCCTTCGACG CGGCATCGGG CAAGGAGGAG TTCGCCTTCA TTCCATCGGG CGTGAAGGAT
TCGCTCAATG TCCTGGCATC CCGGTATGGC GCGGGCGGCG CTCCTCACCG CTACTTCGTG
GACGGGACGC CCGTGGTCTC GGATGTCTAC TTCGGCAACG CCTGGCACAG GGTGCTGGTC
GGCAGCCTGG GCGCGGGCGG GCGGCAGGTC TTCGCGCTGG ACGTCACGGA CCCCACCTCC
CCCCGGTTGC TGTGGGAGTT CGGGGTTGAA CAGGACGAAC GCATGGGTTA CTCGATGCCC
GCGCCTGTCG TGGCGCGGCT CAACGACGCC GGCCGGTCCA AGGGCAGGTG GGTGGTATTC
CTGTCCAATG GCTACCAGGC GTCGAACAGC ACCTCCGGCG AGTCCAGCCT GTTTGTGCTG
GATGTCTCCA GTGGCGAGGT CATCCGGCGC TTTGATTTCG CGGCAGGCAT GACGGCCGCG
GAGCTGAACG CGCTGCCTGC GCCGAAAAAC GGCCTGTCGC GTGCCGCCGT GGTGGACAAC
AACGGCGATG GCAAGGTGGA CGTGGCCTAT GCCGGTGATC TTGCGGGCAA TGTTTGGCGC
GTGGACCTGG CCAGTGGTGC CAGCGGCTCA TGGAATGCGC AACTGTTCTT TGTGGCACGC
GAGTCCGAAC GCAGCGGCGG CAAGCGGCTG TCCATCACCA CCGCACCCTA CGTGGTGCGG
CACTCCAGCG GCAAGGGCGA TGTGGTGGCC TTCGGCACGG GCCGCTTCAT GACGGATGAC
GACAAGCTGG ACATGCGCCG GCAATCGGTG TTCGGTATCT GGGATCGCTA CGGCACACCC
GCCACGGCGG CGCCGCAGCC GCTGCCTACC GCCGGCAAGG GACGCGGGGA TCTGCAGGCC
CAGCAGTTCA CCCAGGTGAG CGGCTTTCCG GGCAAGTTCG CCCTGTCGGC CAACCCGGTC
ACCTGGTACA AGGACGCCAC CAGCACCGCC GACTCCAATG TGCACAGCTG GGGCTGGTAC
GTCGATCTGC CGCGCGATGG AGAAAGACTG GTCTACGACA TGAGCCTGTA CGGGCGGGGA
CTGGTGTTCA CCTCCATCCG GCCACCGCTG GGCGACCCCT GCTCCGCAGG CCTGGCCAGC
ACGATCTACG CCATCGATCC CGACACCGGG GGCAAGACCG ACTATGTCGC CTTCGATGTG
AACGGCGACG GCATCTTCAA CGCCGCCGAC AACCTGGCAG GCCAGCAGGT CAACGGCTAC
GAGGTGGGGC CGGGCAAGCC CACCATCAGC GGCGCGAAGA TCTTCGACTC CAGCGGAAAG
CAAAGCGGGG CAGGAGGCGC GGGCAAGAGC GGGGGCGACG ATATCAACAG CGGAGTGGAC
CGGGGGCGAC AGAGCTGGCG CCGCCAGCCA GCGAACCCGT GA
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| Protein sequence | MARIASWKTM HGPMAMALAL WTCALALAST PAQAQGRADT VLSQMPLFVN QALAPLNMLV
MGRDHKLYYE AYNDASDLNG DGVIDVGYKP DQIDYYGYFN NNVCYSYSKG VFVPSQAATG
SNRKKCSNNW SGDFLNYLAT SRMDAIRRVL YGGMRAEDTA SRTVLQTAYI PRDAHSWGKA
YDPARDLGVY SISDYAPLRQ PAAGTRHLFA VTTLGEAAGV ITQLRVLNDS SFQIWDWVSQ
EGFAGQSNCA GSNSCARGSS RITDYNLLVE ACSSSNVQLL EASCKAYPNG GKTIYKPTGL
LHDFGENGKM YFGLLTGSYE KNIAGGVLRR NISNFAEEVD PQTGQFKTGV NGVVANIDRQ
RLIGYTGGKY VECGWITSGP ISSLDKPSKC AMWGNPISEM MFETMRYFGG ASQALDIYDY
AAGSSKDASL GLSKPAWETP YRAKAEGGGG YQYCSRPVMT VLSDINPSYD GKLPGSRYAS
VGASALNGFN VSDEVAAIGS AERIDGKNFF IGQSTSANAD QAPSVKTIAD LSWARGLSPE
EPSKEGTYYA AGVARFGARN AIFGNSQGKN ALRTYSVAIA SPLPEIRFPI GGKRFVTIAP
FAKTVSGSAG GSTVNNAVFT PTNQIVDYYV VNIANTGKAD IDASVNGGRP YAEFRINYED
VEQGADHDMD AIARYTVALQ ADGKVKIDMV SEYAAGGLGQ HMGYVISGTT KDGMYLEVRD
KDTASAYYAY NTPPNRDPGY CRGSISAQQR TECSNLGLTA TRSFTPGNAT DAGSFLKGPL
WYAAKYGVPD RDPSKITGDP DNYFLVTNAG TLKEQLTKAF NDILQSISSV TAVSVDMPTA
TLGEGADLYR TTFEVQYWSG DVIREKLTTS DRTLVWSAAE LLSARSADDR KIYYPSRTGS
AVSLSPFTYS SLSGQRSDAS WLAVLNTDPA TNSADGQAKK RIEFLRGEVR DDLRVRKPLA
SGKPNVLGDI VNSSLVRVKG GLYRASAADK LEGSTAYAAF AAKQAAKEML YVGANDGMLH
AFDAASGKEE FAFIPSGVKD SLNVLASRYG AGGAPHRYFV DGTPVVSDVY FGNAWHRVLV
GSLGAGGRQV FALDVTDPTS PRLLWEFGVE QDERMGYSMP APVVARLNDA GRSKGRWVVF
LSNGYQASNS TSGESSLFVL DVSSGEVIRR FDFAAGMTAA ELNALPAPKN GLSRAAVVDN
NGDGKVDVAY AGDLAGNVWR VDLASGASGS WNAQLFFVAR ESERSGGKRL SITTAPYVVR
HSSGKGDVVA FGTGRFMTDD DKLDMRRQSV FGIWDRYGTP ATAAPQPLPT AGKGRGDLQA
QQFTQVSGFP GKFALSANPV TWYKDATSTA DSNVHSWGWY VDLPRDGERL VYDMSLYGRG
LVFTSIRPPL GDPCSAGLAS TIYAIDPDTG GKTDYVAFDV NGDGIFNAAD NLAGQQVNGY
EVGPGKPTIS GAKIFDSSGK QSGAGGAGKS GGDDINSGVD RGRQSWRRQP ANP
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