| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2884 |
|---|
| Symbol | |
|---|
| ID | 5748465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3163432 |
|---|
| End bp | 3163989 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641297984 |
|---|
| Product | type 4 fimbrial biogenesis protein PilX |
|---|
| Protein accession | YP_001563907 |
|---|
| Protein GI | 160898325 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4726] Tfp pilus assembly protein PilX |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.66204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.73905 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTGTG TCCTGCACGG GCGCCAGCGC GGCAATGCCT TGCTGGTGTC CATGATCATG
CTGCTGCTGG TGTTGTTGCT GGCGGTGGTC GGCATGCGCG TGGCCACGCT GGAGGCGCGC
ATCGCCGCCA ACATGGTGGA TAGCCAGCGG CTGTATGAAA CCGCGGATGG CACGCTGCGA
GAAGGCGAGC GCAAGCTGCT GGAGCATGCC GTCGCACTCA AGCCTTGCAA TGGCGCCGGC
ACTCCGGTGG CCGAGGGCAG CGGCATTCCC TGCTCGGTGT CCGATGTGCG TACGGATTCC
ATCGGGCTCG GCACGGATTT CCAGACGACC AAGGCCAAGG CGGCAGGGTT TCAGAAGCCC
GATGGGTACT GGTATCCCCG ATACATCACG ACCGCCTGTC CCAAGTCGGG TAGTGCGACG
TCCGCGCTGG ATGCACCCGC CACCGGCTGC ACGGACTTCT ATGAGGTCAA TGCCCAGGCC
ACGGAAAAGT CGCAGGCCCA GGCCTGCGGA GCGGATGCGC TGTGCCTGCG GTCCAGCGTC
AACATGTTCA TAAAGTAA
|
|---|
| Protein sequence | MSCVLHGRQR GNALLVSMIM LLLVLLLAVV GMRVATLEAR IAANMVDSQR LYETADGTLR
EGERKLLEHA VALKPCNGAG TPVAEGSGIP CSVSDVRTDS IGLGTDFQTT KAKAAGFQKP
DGYWYPRYIT TACPKSGSAT SALDAPATGC TDFYEVNAQA TEKSQAQACG ADALCLRSSV
NMFIK
|
|---|
| |