| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2856 |
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| Symbol | |
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| ID | 5748432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3131537 |
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| End bp | 3133786 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641297951 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001563879 |
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| Protein GI | 160898297 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0013983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCG CCAGCAGCGA GGCCGCCGTG CAGGCGCCTT CGCCCGCCGC AGCCGCGCAG
GGCCAGGTGC CGGCGGTGCT GCCGCACCTG ATCACGGCCA CGTCGCAGAC CCTGCCCGAA
CAGGTCAACG CGCTGGCCCG CGCGCGCAGC TTTGCCGAGC CGCTGATCGC CACCGAGACC
ATGGAGTCCG GCGAGAACAC GATGGCCCAT GCCGATGCGG TGGCCGCCAT CCTCAAGACC
ATCGGTGGTT CCGAAACGAT GCAGGCGGCG ATCTATCTGG TGCATGCCAG CGTGCACCTG
AATCGCCCGC AGGAAGTGAT CGCCAAGGCC TTTGGCGAGA ACTTCGCCAC CCTGGCCGTG
GAAACCAACA AGCTCATGCG CGTGCAGCAG CAGGCGCGCG GTGCCGAGCT GGGCGGCCAG
TATCTGGACG ATGAGGCCAC GCAGACCGAG AACGTGCGCA AGATGCTGCT GGGCTTCTCG
CGCGATCTGC GTGTCGTGCT GCTGCGGCTG GCCTCGCGCC TGCAGACGTT GCGCTACTAC
GCGGCCAGCA AGCGCCCGGT CTCTCCCGGC ATTGCGCGCG AGGCGCTGAC GGTGTTCGCG
CCGCTGGCCA ACCGCCTGGG CATCTGGCAG ATCAAGTGGG AGCTGGAGGA TCTGTCCCTG
CGCTTCCTGG AGCCCGAGAC CTACCGCGAA GTGGCCCGCC TGCTCGATGA AAAGCGCGTG
GAGCGCGAAG CCTACATGGA GCAGATGCGG GCACGGCTGG AGGCCGACCT GCGCGCGCAC
AGCATCAGCG CAACGGTGCA GGGCCGGCCC AAGCACATCT ACAGCATCGT CAAGAAGATG
CGCGGCAAGT CGCTGAACTT CGACCAGGTC TTCGACATCC GCGCCATGCG TGTCGTCGTG
CCCACGATCA AGGACTGCTA CGCCACCCTG TCCTGGGTGC ATGAGCAGTT CACGCCCATC
GAGGCGGAAT TCGACGACTA CATCGCCAAG CCCAAGCCCA ACGGCTACCA GTCGCTGCAC
ACCGTGGTGC GCGACGAGAC GGGCCGTGCC ATCGAGATCC AGATCCGCAC CCAGGCCATG
CACGACCATG CCGAGCACGG CGTGGCGGCC CACTGGGCCT ACAAGGAGGC GGGCACCAAG
GGCTATGCGG GCGTCACCGC CAGCAGCGAG TACGACGCCA AGATCGCCGT GCTGCGCCAG
CTGCTGGCCT GGGGCAGCGA CCTGGCGGGC GCACACCATC GCGGCCTGTT CGAGGACCGC
ATCTACGTGC TCACGCCCGA CGCGGCCGTC ATCGAACTGC CGCAGGGCGC AACGCCCGTG
GACTTTGCCT ACTCGGTGCA CACCAGCCTG GGCCACCGCT GCCGTGGCGC GCGCGTGGAT
GGCGCCATGG TGCCGCTGAA CACACCGCTG CAAAACGGCC AGACCGTGGA GATCACCACG
GTCAAGGAAG GCCGCCCCTC GCGCGACTGG CTCAACGCCG ACCTGGGCTA CCTGACCAGC
AACCGTGCCA AGGCCAAGGT GCGTGCCTGG TTCAATGCCC AGGCCACGCA CGAGACCGTG
GCGCGCGGCC GCGAGGCGGT CGAGAAACTG CTGCAGCGCG AGGGCAAGAC GGCCGTCAAG
CTGGAGGAGC TGGCCGTTCA GCTCGGCTTC AAATCGGCCG ATGCCTTGTT CGAAGTCGTC
GGCAAGGATG AATACTCGCT GCGCAACATC GAGACCGTGC TGCGACCGGC CGAGGCGGAG
GAAGAAGTCG AGGAATTCTC CCCGGTGCGC AAGGCGCGCG GCACGGACTC GCCCAAGGGC
GGCGTGCTGG TCGTTGGCGT GGACTCGCTG ATGACCCAGC TGGCCAAGTG CTGCAAGCCT
GCGCCGCCGG ACGACATCCG GGGCTTCGTC ACGCGCGGCA AGGGCGTGAG CGTGCACCGC
TCCGACTGCT CCAACTTCCG CGAGATGGCG GCGCGCAATT CCGAGCGCGT GATCGATGTG
GCCTGGGGTC AGCCCAAGGC GGCCACCGTG GCCTCGGCCG TCTACCCGGT CGATGTGTCC
GTGGAGGCGG CGGACCGGCA GGGCCTGCTG CGCGATATCT CGGAAGTCTT TGCGCGCGAA
AAGACCAATG TCATTGGCGT GCAGACCCAG TCCGTCAAGG GAACGGCCTG GATGACCTTC
ACCGTGGAGG TGGCCGATTC GGGTCGCCTG AGCAAGGTGC TGGGCATCGT GGCCGCCGTG
GCGGGCGTGC GTTCGGCGCG GCGGCGTTGA
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| Protein sequence | MKTASSEAAV QAPSPAAAAQ GQVPAVLPHL ITATSQTLPE QVNALARARS FAEPLIATET
MESGENTMAH ADAVAAILKT IGGSETMQAA IYLVHASVHL NRPQEVIAKA FGENFATLAV
ETNKLMRVQQ QARGAELGGQ YLDDEATQTE NVRKMLLGFS RDLRVVLLRL ASRLQTLRYY
AASKRPVSPG IAREALTVFA PLANRLGIWQ IKWELEDLSL RFLEPETYRE VARLLDEKRV
EREAYMEQMR ARLEADLRAH SISATVQGRP KHIYSIVKKM RGKSLNFDQV FDIRAMRVVV
PTIKDCYATL SWVHEQFTPI EAEFDDYIAK PKPNGYQSLH TVVRDETGRA IEIQIRTQAM
HDHAEHGVAA HWAYKEAGTK GYAGVTASSE YDAKIAVLRQ LLAWGSDLAG AHHRGLFEDR
IYVLTPDAAV IELPQGATPV DFAYSVHTSL GHRCRGARVD GAMVPLNTPL QNGQTVEITT
VKEGRPSRDW LNADLGYLTS NRAKAKVRAW FNAQATHETV ARGREAVEKL LQREGKTAVK
LEELAVQLGF KSADALFEVV GKDEYSLRNI ETVLRPAEAE EEVEEFSPVR KARGTDSPKG
GVLVVGVDSL MTQLAKCCKP APPDDIRGFV TRGKGVSVHR SDCSNFREMA ARNSERVIDV
AWGQPKAATV ASAVYPVDVS VEAADRQGLL RDISEVFARE KTNVIGVQTQ SVKGTAWMTF
TVEVADSGRL SKVLGIVAAV AGVRSARRR
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