Gene Daci_2854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2854 
Symbol 
ID5748430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3129669 
End bp3130463 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content66% 
IMG OID641297949 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001563877 
Protein GI160898295 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.110395 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAAAG GCAAGACCGC CCTCGTGACC GGTTCGACCA GCGGAATCGG CCTCGGGATC 
GCGAAGGCGC TGGCCCGCCA GGGCGCCAAT ATCGTGCTCA ATGGTTTCGG CGATGTGGAC
GGCCCGCGGG CCGAAGTGCT GGCCGCAGGC CAGGCCGCCG GCGCCCAGGT CGCCTACCAC
GGTGCCGACA TGAGCCGCGT GGCAGACATC GAGGACATGG TCCAGTACAG CGTGCGCAAC
TTCGGCCAGA TCGACATCCT CGTGAACAAT GCCGGCATCC AGCACGTGGC ACGCGTGGAA
GACTTCCCGC CAGAGCGCTG GGATTCCATC ATCGCCATCA ACCTGTCCAG CGCCTTCCAC
ACCTCGCGCC TGGTCCTGCC CATGATGCAG GCGGCCGATG GCGGCAAGGG CTGGGGCCGC
ATCATCAACG TGGCTTCGGT GCACGGCCTG GTGGGCTCGG CGCAGAAGTC CGCCTATGTG
GCGGCCAAGC ACGGCATTGT CGGTCTGACC AAGGTCACGG CCCTGGAGAA CGCCACCTCC
GGCATCACCT GTAACGCCAT CTGCCCCGGC TGGGTGCTGA CGCCGCTGGT GCAAAAGCAG
GTGGACGCCA AGGCCGAGCA GCACGGCATC AGCAACGAAG AGGCCAAGAA GCTGCTGCTG
GGCGAAAAGG AACCCTCGAT GCAGTTCACC ACGCCCGAGG AGCTTGGCGA GCTGGCTGTG
TTCTTCTGCT CGCCCGCTGC CGCCAACGTG CGCGGCGTGG CCTGGAACAT GGATGGCGGC
TGGGCTGCGC AGTAA
 
Protein sequence
MLKGKTALVT GSTSGIGLGI AKALARQGAN IVLNGFGDVD GPRAEVLAAG QAAGAQVAYH 
GADMSRVADI EDMVQYSVRN FGQIDILVNN AGIQHVARVE DFPPERWDSI IAINLSSAFH
TSRLVLPMMQ AADGGKGWGR IINVASVHGL VGSAQKSAYV AAKHGIVGLT KVTALENATS
GITCNAICPG WVLTPLVQKQ VDAKAEQHGI SNEEAKKLLL GEKEPSMQFT TPEELGELAV
FFCSPAAANV RGVAWNMDGG WAAQ