| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2786 |
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| Symbol | |
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| ID | 5748362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3063243 |
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| End bp | 3065729 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641297881 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001563809 |
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| Protein GI | 160898227 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.532868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.92327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACAAGC AAGCGCTCAA CCGCGCCTGG CCTCGCCTGC TCGATGCACT GCAGGAGGCC
CTGTGGCTGA TCGATGCGCG CACCCTGAAG GTGCTGCGCG CCAACGCCGC CAGCGAATCC
GTCACCGGCT ATGAGGCCGA TGCGGCCCCG GGCCTGCCCG TGCAGGTGCT GGCCGCCACG
CCGCAGCAGC AGGCTTTCTG GAGCGATCCC TTCAACTGGC AGGCCGGAGC CCAGTTCATT
GCCGAGGTGC GCCGCGCCGA CGGCCAGCTG GCGCCCGTGG AGATGCGCGT GCGCGCGCTC
GACGGCGAGG TGCTGCTGGT CAGCATGCTG GACCGGCGCG AGCAGGCCTT GCACGAGGCC
GAGTTCGAGA GCCTGCTGGG CGAGCTGCGT GCCACGCTGG AGTCCGCGGC CGACGCCATC
CTGGTCTGCG ATCCCGATGG CCGCATCCGC GCCTTCAACC ACCGCTTTGC CACGCTCTGG
GGCATTCCCG AGGCGCTGCT GGTGCGCCGC AACGACGTGG CCATCCTCGA CCACCTGGCC
AGCCAGGTGC GCGATGCCGA ATCCTATGCG CGCCAGTTGA AGCTGCTGTC GGCCCAGCCC
CTGATGGAGG CGGCCGACGT GCTGGACCTG CGCGACGGAC GCATCCTGGA GCGCCGCGCC
GTGCCCCAGC TGCGCCGGGG CCTGCCCATG GGGCGGATCT TTTCCTTTCG CGACATCACG
GCCGAGGCCC AGACCCAGGC GGGCCTGGAG CTGGCCGCGC GCGTCTTCGA ATCCAGCCTG
GACGGCATCT TCATCGCCGA CGGCTACATG GATGTGGCCC GCACCAACCC GGCCTGCGAA
CGCCTGCTGG GCGGCATGCC CGTGCAGGGG CGCACGGTGG AGTCGCTGTT CGAGGCCTCC
GAAGGCCAGG CCGACACCCT GGGCGACCTG GCCCGCATCC AGTGGCATCA GGGCGGCTTC
TGGGAGGGCG ACCTGTGGCT GCGCCAGGCC GGCGGCGCGC GCTGCGCCGT GCGCCTGTCC
TGGGTGCCGC TGCGCAACGC GCAGGGCGAC GTGGTGCAGA GCATCGGCTT CATGCGCGAC
CTCACGCAGC AGCGCGTGGC CCAGCAGCGC ATTGAACAGC TGGCCTACAG CGACGCGCTC
ACTGGCCTGC CCAACCGCCT GAACCTCACG GAGCGCGTGG ATGCAGCCAT CGAGGCCGCG
CGCGCAGGCG GCACGGTGTT CAGCATCCTG TTCATCGACC TGGACCGCTT CAAGATCATC
AACGACTCGC TGGGCCACCA GTTCGGCGAC CGCGTGCTCA AGCTGGTCGC GCAGCGCCTG
AGCGACTGCA TGCGGCCCGT GGACATCCTG TGCCGCCTGG GTGGCGACGA GTTCGTGCTC
TATCTGCAGG GCTGCAACGC CGAGCTGGCA GCGTCGGTGG CCAGGCGCAT CCTGCAGGAG
ATGGAGCGCC CCTTCCTGCT CGACGGCCTG GGTTTCTCCG TGCAGTGCAG CATCGGCGTG
GCCCAGTACC CGGCCGATGG CCTCACGCTG GATGAGCTGA TCCGCCAGGC CGACACCGCC
ATGTACCGCG TCAAGGAGCG GGGCCGGGGC CATTTCAGCT TCTACCAGCC GCAGATGAGC
GCCGGCCTGC TGTCGCGCAT GAAGCTGGAG CACGCCATGC GCCAGGCACT GGAGCATGGC
CGCATGGCGG TCTACTTCCA GCCCCAGGTG CACATAGACA GCGACCGCAT CGTCGCCGCC
GAGGCGCTGC TGCGCTGGAC CGATCCCGAA TTCGGCGTGG TCTCGCCGGG TGTCTTCATC
CCGCTGGCCG AGGAGTCGGG CTACATCGTC ACGCTGGGCG CCTGGGTCAT GGAGCAGGCC
GTGCAGGAGG CTGCACGCTG GCAGCAGCAG GGCATGCCCA TCAAGGTCTC GGTCAACGTG
TCGGCGCTGG AGTTCCGCCA GTCAGGCTTT GTCGAGCGGG TGACCGAGCT GCTGCGCAGC
TACGGCCTGA CACCCCAGCT GCTGGAGCTG GAGCTGACGG AAAGCATCTT GCTGCAGGAC
GCCCAGGACA TGGCGCTGCG CGTGTGCCAG ATTGCCGATC TGGGTGTGGG CATGGTGATT
GACGACTTCG GCACCGGCTA CTCCAACCTG GCCTACCTGA AGAAGCTGCC CATCTCCAAG
ATCAAGATCG ACCAGAGCTT CGTGCGCGGC CTGCCCAGCG ACGAGGGCGA CCAGGCCATC
GTCGGCGCCA TCATCAGCCT GGGTCTGGCG CTGGGCGTGG AGATCGTGGC CGAGGGCGTG
GAAACGCACG AGCAGCTGAC GGCCATCCAC CGCATGCAGG GCCACTACTT CCAGGGCTTT
CTGTGCGCGC CTGGCCTGCC GCGCGAGCAG TTCGGCGAAT GCCTGCAGGC GCAGCGCGCC
GGCATTGGCG CCATCGCCTA CCGGCAGAGA ATGGCCCAGG CCGCGAGCGC TCAGCTGCCT
GCGCTCAAGC CCTTCCAGAG CATGTAG
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| Protein sequence | MNKQALNRAW PRLLDALQEA LWLIDARTLK VLRANAASES VTGYEADAAP GLPVQVLAAT
PQQQAFWSDP FNWQAGAQFI AEVRRADGQL APVEMRVRAL DGEVLLVSML DRREQALHEA
EFESLLGELR ATLESAADAI LVCDPDGRIR AFNHRFATLW GIPEALLVRR NDVAILDHLA
SQVRDAESYA RQLKLLSAQP LMEAADVLDL RDGRILERRA VPQLRRGLPM GRIFSFRDIT
AEAQTQAGLE LAARVFESSL DGIFIADGYM DVARTNPACE RLLGGMPVQG RTVESLFEAS
EGQADTLGDL ARIQWHQGGF WEGDLWLRQA GGARCAVRLS WVPLRNAQGD VVQSIGFMRD
LTQQRVAQQR IEQLAYSDAL TGLPNRLNLT ERVDAAIEAA RAGGTVFSIL FIDLDRFKII
NDSLGHQFGD RVLKLVAQRL SDCMRPVDIL CRLGGDEFVL YLQGCNAELA ASVARRILQE
MERPFLLDGL GFSVQCSIGV AQYPADGLTL DELIRQADTA MYRVKERGRG HFSFYQPQMS
AGLLSRMKLE HAMRQALEHG RMAVYFQPQV HIDSDRIVAA EALLRWTDPE FGVVSPGVFI
PLAEESGYIV TLGAWVMEQA VQEAARWQQQ GMPIKVSVNV SALEFRQSGF VERVTELLRS
YGLTPQLLEL ELTESILLQD AQDMALRVCQ IADLGVGMVI DDFGTGYSNL AYLKKLPISK
IKIDQSFVRG LPSDEGDQAI VGAIISLGLA LGVEIVAEGV ETHEQLTAIH RMQGHYFQGF
LCAPGLPREQ FGECLQAQRA GIGAIAYRQR MAQAASAQLP ALKPFQSM
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