| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2752 |
|---|
| Symbol | |
|---|
| ID | 5748328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3022415 |
|---|
| End bp | 3025606 |
|---|
| Gene Length | 3192 bp |
|---|
| Protein Length | 1063 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641297847 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001563775 |
|---|
| Protein GI | 160898193 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.262647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCCGAT CCTTGCTGGC CTTCGTGCTT TCGCGCAGGC CCATCGTCCT GCTGGCCCTG
CTGGCCTTCC TCGGCCTGGG GCTGCTGGCC TTCGCCAAGC TCAATGTCGA GGCCTATCCC
AATCCCGCCC CCGTGATCAT TGAAATCACG GCCCAGGTGC CGGGCATGTC CTCCGAGGAG
ATGGAGCGCT ACTACACCCG TCCCATGGAA GTGGGCCTGG CGACCACGCC CGATGTGGAG
AACATCCGCT CGACCTCGTT CTACGGCCTG TCCTTCGTGC GCGTGACCTT CAAGTACGGC
ACGGACTACT ACTTCGCACT GACCCAGATC GCCAACAACC TGCAGGCCAA CGTGAACCTG
CCCGGGGGCG TGCAGCCGCA GATCCAGGCG TCCAGCCTGG TGGGCGAGAT CCTGCGCTAC
CAGGTCAAGG GCCCGTCCAC CTACAGCCTC ACCGACCTGC GCACCCTGCA GGACTGGGTG
ATTCAGCGCC GCCTGCTCAC GGTGCCCGGC GTGGTGCAGG TCGTGACCTG GGGCGGTACA
ACCAAGGAGT ACCACGTCGA GGCGGACCCC AAGCGTCTGG AAGCCCACGG GGTGACGCTG
CGCAATCTCA TCGAGGCCAT AGGCAACGCC AACCTCAACG TGGGCGGCCG CGCCATCAGC
GTGGGCGACC AGTCGGTCAA CATCCGTGGC CTGGGCCTGG TGCGCAATGT CGACGATGTG
GCCAACATCG TCGTGGGCCA GAAGAATGGC CTTCCCACGC AGGTCAAGGA CGTGGCGCGC
ATCGTCGAAG GCACGGTGCC GCGCCTGGGC GAGGCCGGCC GCGATCTGCA GAACGATGTG
GTCACGGGCG TGGTCATCAT GAACCGCACG CTGCACACCA GCGACGTGAT CGGACGCGTG
AAGGCCGCCG TGGAAAAGAT CAACGCCGAC GGCTCGCTGC CGGCCGGCGT CAGGCTGGAG
CCCTACTACG ACCGCGCCGT GCTGGTGAAC GTCACCACGC ACACCGTGCT GCACAACCTC
ATCTTCGGCT GCCTGCTGGT GTTCCTCATC CAGTGGATCT TCCTGGGCGA CCTGCGCAGC
GCCGTGATCG TGAGCGTGAA CATTCCGTTC GCGCTGTTCT TCAGCATCAT GATGCTGGTG
ATCACGGGGG AATCGGCCAA CCTGCTCTCC CTGGGGGCGG TGGACTTCGG GATCATCGTC
GATGCGGCGG TGATCCTGGT CGAGAACATC TTCCGCAATT TCCAGCGGCC CACGCCCATA
CGCGCCTCCA TGCTGCGCGC CATGGCCCAG GGGCCGGACG GCGCGCGCAC CAGCCCCGGC
AAGGGATGGA CCTCGCGTCT GCGCATGATC TACCTGAGCG CCACCCAGGT GGACAGCTCG
GTGCTGTTCT CCACCTTCAT CACCATTGCC GCCTTCACGC CGCTGTTTGC CATGCAGGGC
GTGGAGGGCC AGATCTTCGG CCCCATGGCG CGCACCTACG GCTACGCCCT GGCCGGCGCG
CTGCTGGCCA CCTTCACCAT CACGCCCGTG CTGGCCAGCT ACCTGCTGCC GGCCAAGGTG
CAGGAGAAGG AAACCTTCAT CGTCCACGCC ATCCAGCGTG CCTACCAGCC GGCGCTGCAC
TGGGTGCTGC ACCATGTGCG GGCCGTCCTG GTGATGGGCC TGGTCGCCCT GGTCGCCGGT
GGATTCATGG CCAGCCGCCT GGGCAGCGAG TTCCTGCCCG CGCTGGAGGA AGGCAACCTG
TGGATACGCG CCTCGATGCC GCCCACGATC TCGCTGGAGG CCGGCCGCGA CAAGGCCAAC
CGCATGCGGC AGATGATCAA GGAGTACCCC GAGGTCATCA CCGTGGTGTC CCAGCATGGC
AGGCCCGATG ACGGCAGCGA TGCCTCGGGC TTCAACAATG TGGAACTGTT CGCGCCGCTG
CAGCCCTTCG ACAAATGGCG CCCCGGCATG ACCAAGGAAC GCCTGGTGCG CGAGCTGCAG
GGCCGCTTCG AGGCCGAGTT CCCCGGCGTG AGCTTCAACT TCTCGCAGTA CATCCAGGAC
AACGTCCAGG AAGGCCTGTC GGGCGTGAAG GGGGCCAACT CGGTCAAGAT CGTCGGCCCC
GACCTCGCCA CCCTCGAAAA GCTGGCCAGC CAGGTCTACG AGGTGATGTC GCACATCGAC
GGCGTGGCCG ACCTCGGGGT GTTCCACATC CTGGGTCAGC CCAACATGAA CATCCAGATC
GACCGTGCAC GGGCGGCGCG CTACGGACTC AACACGGGCG ACGTGGCCAG CGCCATCCAG
GCGTCGCTCG GCGGCGTGGA GGCGACCACG GTGCTGGAGG ACGACCGCCG CTTCGCGCTG
ACCGTGCGCT TCGCACAGGA TGCCCGCGCC ACGCCCGAGG CCGTGCGGGC CCTGCGCGTG
GGCTACACCA CGGCGGGGGG CAGCACCTCG TACATCCCGC TGGAGGACGT GGCCACCATC
ACCCTGGACA CCGGCGCCAC CTACATCTAC CGCGAAAGCA ACGAGCGCTA CATCCCCATC
AAGTTCAGCG CACGCAACCG CGACCTGGGC AGCACCGTCT CCGAAGTGCA GCACCGCCTG
GGGCAGGAGA TCCACCTGCC CCAGGGCTAC CGGCTGGTCT ATGCCGGCGA GTTCGAGGCC
CTGCAGCAGG CCAAGGCCCG CATGCTGATC GCCATTCCCG TGGCCGTGGT GCTGATCCTC
GCCCTGCTCT ACGCGCTGTT CAACAACTTC ACCTACTGCC TGCTGACCCT GGCCTCCGTG
CCGTTCACCG TCTTCGGCGG CATCCTGGCG CTGTATGCGA CAGGCCAGGT GCTCAGCATC
TCGGCCGTGA TCGGCTTCAT CTCGCTGCTG GGCGTCTCGG TCATGGATGG CATCCTCATC
CTGTCGTACT TCCAGGAGAT GCGCTCCCAC GGCCACGGCC ACCTGCAGGC CATGGAGGAG
GCCTACCGAA GCCGCATGCG CCCGCTGCTC ATGACGGCCC TGTCCGCCTG CATCGGCCTG
CTGCCTGCGG CCATGTCGCA CAGCATCGGC AGCGAGGTGC AGCGGCCGCT GGCCACGGTC
GTGGTCGGCG GCATGCTCAT CGGGCCGATT TTCCTGCTGC TGCTGCTGCC GGCGCTGCGC
CTGGCCGTGC TGCGGCGCGT CAAGTTCGCC AAGAAGCGTG AAGGCCTGGG AGGCAAACGT
GTACACGCAT GA
|
|---|
| Protein sequence | MFRSLLAFVL SRRPIVLLAL LAFLGLGLLA FAKLNVEAYP NPAPVIIEIT AQVPGMSSEE
MERYYTRPME VGLATTPDVE NIRSTSFYGL SFVRVTFKYG TDYYFALTQI ANNLQANVNL
PGGVQPQIQA SSLVGEILRY QVKGPSTYSL TDLRTLQDWV IQRRLLTVPG VVQVVTWGGT
TKEYHVEADP KRLEAHGVTL RNLIEAIGNA NLNVGGRAIS VGDQSVNIRG LGLVRNVDDV
ANIVVGQKNG LPTQVKDVAR IVEGTVPRLG EAGRDLQNDV VTGVVIMNRT LHTSDVIGRV
KAAVEKINAD GSLPAGVRLE PYYDRAVLVN VTTHTVLHNL IFGCLLVFLI QWIFLGDLRS
AVIVSVNIPF ALFFSIMMLV ITGESANLLS LGAVDFGIIV DAAVILVENI FRNFQRPTPI
RASMLRAMAQ GPDGARTSPG KGWTSRLRMI YLSATQVDSS VLFSTFITIA AFTPLFAMQG
VEGQIFGPMA RTYGYALAGA LLATFTITPV LASYLLPAKV QEKETFIVHA IQRAYQPALH
WVLHHVRAVL VMGLVALVAG GFMASRLGSE FLPALEEGNL WIRASMPPTI SLEAGRDKAN
RMRQMIKEYP EVITVVSQHG RPDDGSDASG FNNVELFAPL QPFDKWRPGM TKERLVRELQ
GRFEAEFPGV SFNFSQYIQD NVQEGLSGVK GANSVKIVGP DLATLEKLAS QVYEVMSHID
GVADLGVFHI LGQPNMNIQI DRARAARYGL NTGDVASAIQ ASLGGVEATT VLEDDRRFAL
TVRFAQDARA TPEAVRALRV GYTTAGGSTS YIPLEDVATI TLDTGATYIY RESNERYIPI
KFSARNRDLG STVSEVQHRL GQEIHLPQGY RLVYAGEFEA LQQAKARMLI AIPVAVVLIL
ALLYALFNNF TYCLLTLASV PFTVFGGILA LYATGQVLSI SAVIGFISLL GVSVMDGILI
LSYFQEMRSH GHGHLQAMEE AYRSRMRPLL MTALSACIGL LPAAMSHSIG SEVQRPLATV
VVGGMLIGPI FLLLLLPALR LAVLRRVKFA KKREGLGGKR VHA
|
|---|
| |