| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2696 |
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| Symbol | |
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| ID | 5748272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2964490 |
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| End bp | 2966961 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641297791 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001563719 |
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| Protein GI | 160898137 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0851108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TCGCCGAATA CCGCCAGCGA CCGGCCTTGC TCGCCGACTG GCTGCCCTGG
GCCGGACTGG TGGCACCGGG CGTCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACGGCG
CGCTTTCGTG GCCCCGACCT CGACAGCGCG ACGCAAGGCG AGCTGATCGC CACATCGGCG
CGCTTGAACA ACGCGCTGCG CCGCCTGGGT TCGGGCTGGG CGCTGTTCAT CGAAGCCGAG
CGCCGGTCTG CCGCCGACTA CCCGCACTCC GATTTCCCCG AACCGCTGTC CTGGCTGGTC
GATGAAGAAC GCCGCGCCGC CTTCGAGGAT TCGGGCAACC ACTTCGAGAG CGGCTATCAC
CTGACGCTGG CCTACCTGCC GTCCGAGGAA TCCCGTGCTC GGGCCGCGGG CCTGCTGTAC
GAAAACCGGC CCACCGAAGG CGTGGATTGG CGCGAGCGGC TGCACGCCTT CGTCGCTGAA
ACGGATCGCA TCTTCGACCT GCTCGATGGC GTGATGCCGG AGATCGCCTG GCTTGATGAC
AGCCAGACGT TGACCTACCT GCATTCGACC GTCTCGACGC GCCGCTACCG CGTCGGCGTT
CCCGAAGTGC CGTTCCACAT CGACGCGCTG CTGACCGATT CCGCGCTGGT CGGTGGCCTG
GCGCCGATGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGCGGTTT CCCGACCTCG
ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCCTGGGCT TCGCGTATCG CTGGAGTACG
CGCTTTCTGT GCCTCGACAA AGCCGAGGCG GAAAAAGAAC TCGCCCGACT GCGCCGCCAG
TGGTTTGCGA AAAGGAAGAA CGTCATCGCG TTGCTGCGCG AGACGATCTT CCAGCAGGAA
AGCCCGCTGG TCGATACCGA CGCCAACAAC AAGGCCGCCG ACGCCGATGC TGCCTTGCAG
GAGCTGGGCA GCGATCAGGT CGCCTTCGGC TACCTGACGG CGACCGTCAC CGTCATGGAC
GCGGACGCCG CCGTTGCCGA CGAGAAGCTG CGCATGGTGG AGCGCGTCAT CCAGGGGCGC
GGCTTCGTCA CCATCCCCGA AACGCTCAAC GCCGTGGATG CGTGGCTGTC GTCCATTCCG
GGCAACGCAT ACGCCAATGT CCGCCAGCCC ATCGTCTCGA CGCTGAACCT GGCGCACATG
ATGCCGGTGT CGGCGGTATG GGCCGGCCAG GAACGCAATG CGCATCTCGA TGGGCCGCCG
CTGATCGTCA CGCGCACAGA CGGCGCCACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCAACA CGCTGGTGGT TGGCCCCATC GGCATGGGCA AGTCGGTGCT GCTGGCGACG
ATGGCGATGC AGTTCCGCCG CTATCGCGGC TCGCGCATCT TCGCCTTCGA CATGGGGCGC
TCGATCCGCG CGGCCATCCT GGGCATGGGC GGCGAGCACT ACGACCTGGG CGCGGACGAC
GAGATCGCCT TCCAGCCGCT GGCGCGCATC GACCGAGAGG GCTACCGCAC CTGGGCCAGC
GAATGGGTGG AAGGCCGCCT GCTGCACGAA GGCGCGGCCG TCGGCCCGGA CGAGAAGGCG
GCCATCTGGT CTGCGCTGGG GAGCCTGGCC AGCGCGCCGG TGGAGCAGCG CACGCTCACG
GGCCTGACGG CCTTGCTGCA ATCGAACACC TTGCGCCAGG CACTCGCGCC CTACGTCCTG
GGCGGCGCGC ACGGCAGGCT GCTGGATGCC GACCACGACC GCCTCGGCAC ATCCGACGTG
CAGGCGTTCG AGATGGAGGA GCTGATGCAC AGCAAGGCTG CTGTGCTCGC GGTGCTGCGC
TACCTGTTCG CGCGCTTCGA GGAGCGGCTG GATGGTGCGC CCACGCTGCT GATCCTCGAT
GAAGCCTGGC TGTTCCTCGA TGACCCGGTG TTTGCGGCGC GCATCCGCCA GTGGCTCAAG
ACGCTGCGCA AGAAGAACGT CAGTGTCATC TTCGCCACGC AGTCGCTCGC GGACGTGAAG
GATTCGGCCA TCGCGCCGGC CATCATCGAA AGCTGCGCGA GCCGGATTTT CTTGCCGAAC
CCGCAAGCGA CCGAACCGCA GATTCGCACG ATCTACGAGG GCTTCGGCCT CAACAGCCGG
CAGATCGAGA TCGTCGCCAC TGCGCAACCC AAGCGCGACT ACTACTACCA ATCCCGCCTC
GGCAACCGCG TGTTCGACCT CGACCTGGGG CCGGCGACGC TGGCCTTCGC GGGCGCTTCC
ACGCCACAAG ACCAGCGCGC CATTGATGAA GTTCTTGGCC GCGTGCCGCA GGACGCCGGC
GTGCCCGGCT TCGCGGGCGC CTGGCTGCGC CATCGCGGCC TCGATTGGGC GGCAGACCTG
CTGCCCTCGT TCCCCGGCCT CACGCCGGAT TCCCTCCGTA CCGCTGACCA CCCCCAGGAG
AACCTGCCAT GA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRLG SGWALFIEAE RRSAADYPHS DFPEPLSWLV DEERRAAFED SGNHFESGYH
LTLAYLPSEE SRARAAGLLY ENRPTEGVDW RERLHAFVAE TDRIFDLLDG VMPEIAWLDD
SQTLTYLHST VSTRRYRVGV PEVPFHIDAL LTDSALVGGL APMLGDQHLR VVSVRGFPTS
TWPGILDDLN RLGFAYRWST RFLCLDKAEA EKELARLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDANN KAADADAALQ ELGSDQVAFG YLTATVTVMD ADAAVADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPVSAVWAGQ ERNAHLDGPP
LIVTRTDGAT PFRLVTHIGD VGNTLVVGPI GMGKSVLLAT MAMQFRRYRG SRIFAFDMGR
SIRAAILGMG GEHYDLGADD EIAFQPLARI DREGYRTWAS EWVEGRLLHE GAAVGPDEKA
AIWSALGSLA SAPVEQRTLT GLTALLQSNT LRQALAPYVL GGAHGRLLDA DHDRLGTSDV
QAFEMEELMH SKAAVLAVLR YLFARFEERL DGAPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADVK DSAIAPAIIE SCASRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KRDYYYQSRL GNRVFDLDLG PATLAFAGAS TPQDQRAIDE VLGRVPQDAG
VPGFAGAWLR HRGLDWAADL LPSFPGLTPD SLRTADHPQE NLP
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