| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2690 |
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| Symbol | |
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| ID | 5748266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2959059 |
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| End bp | 2960327 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641297785 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001563713 |
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| Protein GI | 160898131 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00708765 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGG ACGATTCCCC TGATCTTGCG GCGCAGGCGG GCAAGGTCGC GCCCGAGGCG
GTGGCGCTGC GCGCCCAGCC GCGCCCGGTC ACGCGCCTGA ACCGGCGCAC GCTGGCCATC
CTCGTCGGCG TCCTGTCGGT CGCCGTGCTC GGGGCCACGA TCTGGTCATT GCAGCCGCAC
CGGCGCGGCA CGGGCGAGCA GACCGAGCTT TACAACGTCG ATCGCGTCTC GAAGTCCGAG
GGGCTGGATG GTCTGCCGGC CGACTACTCG AAGCTGCCGC CGAAGGTGCC CGAGCTGGGG
CCGCCGCTGC CGGGTGATCT CGGCCCAGCC ATCGTGAAGT CGCAGCAGCC GGTGACGCCG
GCCTACGCAC AGCCGGGACA TGATCCGGCG GATGCATGGC GCAAGGAGGC CGATGCGGCG
GCGAACTCGT CGGTGTTTTT CCGCTCGGGC AACCAAGGCA AGGCCACCGC GCCGGTCACG
GCGCAAGCCG CTGCGGCTGC GCCCGGCAGC GCCTTGGCGG GCTTCGACCC GCTGGCCGCT
GGCCCGGCCT CGACGGCGGC CCAGCCATCC GACCCGACAG CCGTGCAGAA CCGGCAAGAC
CAGAAAGAGG CTTTCCTGAA AGGCGGTTCT ACGGAAACCC GCAATTCCGG CAATCTCCAG
ATGCCGGCCT CGCCGTATCA GGTCATGGCG GGAACGGTGA TCGCGGGCGC GCTGGTGACG
GGCATCAAGT CCGATCTGCC GGGCGACGTG ATAGCCACGG TGACGGAGCC GGTCTATGAC
ACGGCCACTG GCAAGTTCCT GCTGATCCCA CAGGGATCGC GCATCCTGGG CAAGTACAAC
AGCCAGGTGA GCTACGGGCA GAGCCGCGTA CAGGTGGTGT GGAACCGCGT CATCCTGCCG
GACACGTCCT CGCTGAAGCT AGACAACCTG GCGGGCACTG ACCCTGCCGG CTATTCCGGC
CTGGAGGATG GCGTCGATTG GCATTGGGAT CGCGTCTTCG CGGGTGCGGC GCTGACGACC
CTGCTGGGCG TGGGTGCCGA GTTGGCCGCA CCGGAAAACC GGCAGGATGG CAACCGCATC
GTGATCGCTG GGCGCGATAG CGCGCAGGAC AGCATCAACC AGGTCGGCCA AGAGATGACC
CGGCGCAACA TGAACATCCA GCCGACGCTG ACCGAGCGGC CGGGCCTGCC GGTGCGGATC
ATCGTCAACC GCGATTTTGT GCTGCGGCCG TACCAGCCTA TGTTCTTCAA CCGTGGAATT
GCGAAATGA
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| Protein sequence | MSQDDSPDLA AQAGKVAPEA VALRAQPRPV TRLNRRTLAI LVGVLSVAVL GATIWSLQPH
RRGTGEQTEL YNVDRVSKSE GLDGLPADYS KLPPKVPELG PPLPGDLGPA IVKSQQPVTP
AYAQPGHDPA DAWRKEADAA ANSSVFFRSG NQGKATAPVT AQAAAAAPGS ALAGFDPLAA
GPASTAAQPS DPTAVQNRQD QKEAFLKGGS TETRNSGNLQ MPASPYQVMA GTVIAGALVT
GIKSDLPGDV IATVTEPVYD TATGKFLLIP QGSRILGKYN SQVSYGQSRV QVVWNRVILP
DTSSLKLDNL AGTDPAGYSG LEDGVDWHWD RVFAGAALTT LLGVGAELAA PENRQDGNRI
VIAGRDSAQD SINQVGQEMT RRNMNIQPTL TERPGLPVRI IVNRDFVLRP YQPMFFNRGI
AK
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