| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2572 |
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| Symbol | |
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| ID | 5748141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2845345 |
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| End bp | 2846190 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641297660 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001563595 |
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| Protein GI | 160898013 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0455716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGG ATCAGTACGT CCAAGACAAG GCCGCCGCCT CGGGCAGCAG CTTTTATTAC
GCCTTCCTCT TCCTGCCGCG CGAGCGCCGT GCGGCCATCA CCGCCTTTTA TGCGTTCTGC
CGCGAAGTGG ACGACGTGGT GGACGAAGTC TCCGACCCCG GCGTGGCCGC CACCAAGCTC
GGCTGGTGGC AAAACGAAGT GCACCAGGCC TTTGCAGGCA AGCCCTCGCA TCCCGTAATG
CGGGCGCTCA TGCCGCACGC CCCGGTCTAC GGCATCGAGG AGCGCCACCT GCAGGCGGTC
ATCGACGGCT GCCGCATGGA CCTGGAGCAG ACCCGCTACC TGGACTTCCA GGGCCTGACG
CGCTACTGCC ACCTGGTCGC AGGCGTGGTC GGCGAAGTGG CCGCACGCAT CTTTGGCCAA
ACACAGGAAG AAACCACGGC CTACGCCCAC AAGATGGGTC TGGCCTTCCA GCTGACCAAC
ATCATCCGCG ACGTGGGCGA GGACGCCATG CGCGGACGCA TCTACCTGCC CATCAGCGAG
CTGCAGCAGT TCGACGTCAA GGCGCATGAG ATCACCAAGC GCGAATACTC GGACCGCTTC
ACCGCGCTGA TGCGCTTTCA GGCCGAGCGC GCCCACCGCC TCTACGACGA GGCCCTGGCC
CTGCTGCCCG CCGCCGACCG CCGCACGCAA AAGCCCGGCC TGATGATGGC CAGCATCTAC
CGCACCCTGC TGCGCGAGAT CGAGGCCGAC GACTTCCGCG TGCTGCACCA GCGCATCAGC
CTGCCGCCGC TGCGCAAGCT GTGGCTGGCC TGGAAGATGC AGGCGCTGGG GCGCATGGCG
CGGTGA
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| Protein sequence | MNPDQYVQDK AAASGSSFYY AFLFLPRERR AAITAFYAFC REVDDVVDEV SDPGVAATKL
GWWQNEVHQA FAGKPSHPVM RALMPHAPVY GIEERHLQAV IDGCRMDLEQ TRYLDFQGLT
RYCHLVAGVV GEVAARIFGQ TQEETTAYAH KMGLAFQLTN IIRDVGEDAM RGRIYLPISE
LQQFDVKAHE ITKREYSDRF TALMRFQAER AHRLYDEALA LLPAADRRTQ KPGLMMASIY
RTLLREIEAD DFRVLHQRIS LPPLRKLWLA WKMQALGRMA R
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