| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2571 |
|---|
| Symbol | |
|---|
| ID | 5748140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2843960 |
|---|
| End bp | 2845348 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641297659 |
|---|
| Product | squalene-associated FAD-dependent desaturase |
|---|
| Protein accession | YP_001563594 |
|---|
| Protein GI | 160898012 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2907] Predicted NAD/FAD-binding protein |
|---|
| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0585158 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAGAG ACAGCGCCAA GCACACGCCT CGCGCCGCTC AGCCGCGCGC CGCCATCATC
GGCGGAGGCT GGGCCGGCTT TGCCGCCGCC CTCACGCTGG CGCGCAGCGG CTGGCACATC
ACCCTGCACG AGGCCGCACG CGAGCCCGGC GGCCGTGCGC GCGGCATGGA CCTCGACACG
CCACAGGGCC CGCTGCGCGT GGACAACGGC CAACACATCC TCATCGGTGC CTACACCGAA
AGCCTGCGCC TCATGCGCGA GGTGGGCGTG GACCCTGAAC AGGCCCTGCA CCGCCAGCCC
ATGGCCTTGC CCTATATCGA TGGCAGTGGG CTGCGCTTTC CCGACTGGCC TGCGCCGCTG
GATGCGCTGG CCGGCATTGC CACCGCACGC GGCTGGAGCC TGGGCGAGCG TGCAGCCCTG
CTGGCGCGCG CCGTGCGCTG GCGGCTGGCG GGCTTTCGCT GCGCGCCGCA AGCCACCGTG
GCCGACCTGT GCGCCGGCCT GCCGCAGCGC CTGGTCACCG AGTTCATTGA CCCGCTGTGC
ATCTCGGCAC TCAACACGCC CATTCACCTG GCCAGCGGCA CGGTGTTCCT TCGCGTGCTG
CGCGATGCGC TGTTCAGCGG CCGTGGCGGC TCGCATTTCC TGGTGCCGCG CCGTGACCTG
GGCAGCCTGT TCCCGGCGCC GGCCGCGCAG TGGCTGCAAG AGCGCGGCCA CGCCGTGCGC
CTGGGCAGCC GCGTGGCCGA ACTGCAACCC CAGGGCCCGC ACTGGACGCT GGGCGCAGCC
CAGGGCGAAG ACGCGCCCTT CGACGCCGTG CTGCTGGCCT GCCCAGCGCC CGAAGCAGCG
CGCCTGGCAC TCACCGCCGC CGAGCACGAC AGCCTGCCTG CACGCGACGG CATAGCCCTG
CAGCGCTGGG CGCAGCTGGC CCAGGACCTG CAGCACCGCC CCATTGCCAC CGTCTATGCG
CAGACCGGCG ATCCCTCCCA CACATTGCCC CCGGGCGCGC CCTGGCTGGC GCTGCGCTCC
ACGCCCGATG CGCCTGCGCA ATTCGTCTTC GACCGTGGGC AACTCGGCGG CCCTCAGGGC
CTGATGGCCT TCGTCATCAG CGACAGCGCA TCGGACCGCG AAACCCTGCA GGCCCAGGTG
CTGGCCCAGG CCCGGGCGCA GTTGGGCTGG CATGGACTGG TTGCGCTGCG CACCGTGATC
GACAAGCGCG CCACCTTCGC CTGCCTGCCG CAGCTGCAGC GCCCCGGCAT GGAGTTGGGC
CACGGCCTGT GGGCCTGCGG CGACCATGTG GATGGACCGT ATCCGGCCAC CATCGAGGGC
GCCGTGCGCA GCGGCCTGCA GGCGGCCGAG GCCATCGGAC AGGCCCTGGG TGCCGAGGGA
AAAGCCTGA
|
|---|
| Protein sequence | MSRDSAKHTP RAAQPRAAII GGGWAGFAAA LTLARSGWHI TLHEAAREPG GRARGMDLDT
PQGPLRVDNG QHILIGAYTE SLRLMREVGV DPEQALHRQP MALPYIDGSG LRFPDWPAPL
DALAGIATAR GWSLGERAAL LARAVRWRLA GFRCAPQATV ADLCAGLPQR LVTEFIDPLC
ISALNTPIHL ASGTVFLRVL RDALFSGRGG SHFLVPRRDL GSLFPAPAAQ WLQERGHAVR
LGSRVAELQP QGPHWTLGAA QGEDAPFDAV LLACPAPEAA RLALTAAEHD SLPARDGIAL
QRWAQLAQDL QHRPIATVYA QTGDPSHTLP PGAPWLALRS TPDAPAQFVF DRGQLGGPQG
LMAFVISDSA SDRETLQAQV LAQARAQLGW HGLVALRTVI DKRATFACLP QLQRPGMELG
HGLWACGDHV DGPYPATIEG AVRSGLQAAE AIGQALGAEG KA
|
|---|
| |