| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2475 |
|---|
| Symbol | |
|---|
| ID | 5748038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2733899 |
|---|
| End bp | 2736190 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641297557 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001563498 |
|---|
| Protein GI | 160897916 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.28952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.558781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGTC ATCGAGTCGA GGCGGAAATC CATTTGTCCC TGCGCCGGGT CGTTCTGGTC
GGCAGCCTAT GGATCACCAG CCTCACCGTG CTCCTGGCCA TGGCGCTGCT GATGCAGGAC
CCCGTTCCCT GGCCCAGCGT GCGGCTGAAC CTGGTTGCCG CCGGCGTGAG CTTCGGCGCC
GTGCTGCTGG GCTGGCGCCG GCACTGGAAG CTGGCCTCCA ATCTTCTGGT CTGGGGCACC
TGGGTGGCAG CCGTGACCGT GGTGGCTGCC ACGGGCGGCG TGCAAAGCAG CTCGGTGCTG
GCCTTTCCGG CCTTGCTCGT CATGTGCGCC TGGGTGCTGG GCGTGCGCAC CACGCTGGCC
ATGCTGGTGC TGTCCGTGCT GGCCATGGCC GCGTTCTGGG TGGCGGGCCG CGAGGGGGTT
GACTGGATAG GCCAGCGCGA GACCTCGCCC GTGTTCTCCA TGCTGTACTT CGTGGGCATG
CTGGGGCTGA CGGGCACGGT CACGCTGATG GCAAGGCGCA GCCTGATCCG CCGTGCCCAG
GAACTGCAGG ACACGCTGGG CTCGCTGGAG CAGCACCAGG ACGATCTGCG CAAGTTCTAC
CGCGCCGTGG AGCAGAACCC CGAAAGCATC GTCATCACCG ACGTGCACCA GAACATCGTC
TACGTGAACG AGGCCTTCTT GCAGCGCACC GGCTTTGCGC GCAACGAGGT CCTGGGCCAG
CCCACGCACC GCTACTCCAC CATGGGCCTG GACGCGCCGG CCTGGGAAGA GGCCTTGCAC
CAGCTGGGCC GGGGCGCGCT GTGGCGCGGC CAGATGACCA ACCGCACGCG CCAGGGCGAG
GACCTGCCCG AGGCCGTGCT GGTGGCGCCC ATACGCGCCT CGGACGGCAG CATCGTCAAC
TATGTGGAAC TCAAGCAGGA CCTGTCCGAG CGCATGCGCG CAGAACGCCA GATCCACGCG
CTGGCGCATT TCGACGCGCT CACCGGCCTG CCCAACCGCC TGTCGCTGAC CCAGCGCCTG
CGCGCGCTGG CGCGCGAATT CCGCGAGGGC GGCAAGGGCG GCGAGCCGCG CCACGGCCTG
CTGCTGCTGG ACATGGACCG CTTCACGGCC TTCAACGATG TGCGCGGCAC GGTGCGCGGC
GATGCGCTGC TGGGCGCGCT GGCGCTGCGC CTGGCCGATG CCCTGCCCGA CGGCGTGCTG
CTGGCCCGCA TGGGCGCCGA TGAATTTGCC GTGCTGCTGG AGAAGGCCGG CCAGGAGGCG
GCCGAGGTCG ATCAGCACAT GCGCGCCCTG GCCCAGGTGC TGCAGGACGC GCTGGAGCGG
CCGCTGTGGC TGGAGGAAAC CGGCGAGGAA GTGCAGGCCA GCTGCAGCAT TGGCGCGGCC
AGCTTTGCCG CCTCGCGCAC CGACAGCGGT GGCCACGATG TGCTGCGCCG CGCGGGCGTG
GCCCTGCACC AGGCCAAGCA GGCCGGGCTG GGCCAGGTTG TCATCTTCCA GCCCGACATG
GCCGAGGCCG TGGGCAAGCG CTTTCGCATC GAAAAGGACT TGCGCCGCGC CATTCCTGCC
GGCGAGCTGC AGCCCTATCT GCAGTCCCAG GTGGACCACA TGGGGCGCTG TGTGGGCGCC
GAGGTGCTGG TGCGCTGGAA CCATCCGCGC CTGGGCATGG TCGAGCCCGG TGATTTCATT
CCCGTGGCCG AGGAATCGGA CCTGATCGTG CAACTGGGCG ACTGGATGCT GGAGCAGGCC
TGCCGCATGC TGGTGCGGCC CGAGTTCGTG CAGCAGGGCT GGCGGCTGTC GGTCAACGTC
AGCTGGCGGC AGTTCCGCCA GCCCGACGTG GTGGACAAGC TCAAGCGCAC CCTGGCCGCA
ACCGGGGCCG ACCCGCGCCG CCTCACGCTG GAGGTCACCG AAAGCGTGGT CATGCGCGAT
GTGGACGAGG CGCGGGAGCG CATGGCCGAG CTGCAGCTGC TGGGCGTGGA GATGGGGCTG
GACGACTTCG GCACCGGCTA TTCATCGCTG GCCTATCTGC AGCGGCTGCC ATTCCGTGAA
CTCAAGATCG ACAAGTCCTT TGTGCAGGAC TGCCATACCT CGCCGGGCAA TGCCGCCATG
GTCGAGGCGA TCCTGCTGCT GGCCAGACGC CTGCGCCTGC GCGTGGTGGC CGAAGGAGTG
GAGACCGAAG AGCAGGCCGG CACGCTGCGG GCCTGGAACC AGGACGTGCT GTTCCAGGGC
TACCACTACG GCCGGCCGCT GCCGGCGGTC GAGTGGGTGG ACCTGCAGCT GGGGGCGCCT
GCCGGCGTGT GA
|
|---|
| Protein sequence | MRRHRVEAEI HLSLRRVVLV GSLWITSLTV LLAMALLMQD PVPWPSVRLN LVAAGVSFGA
VLLGWRRHWK LASNLLVWGT WVAAVTVVAA TGGVQSSSVL AFPALLVMCA WVLGVRTTLA
MLVLSVLAMA AFWVAGREGV DWIGQRETSP VFSMLYFVGM LGLTGTVTLM ARRSLIRRAQ
ELQDTLGSLE QHQDDLRKFY RAVEQNPESI VITDVHQNIV YVNEAFLQRT GFARNEVLGQ
PTHRYSTMGL DAPAWEEALH QLGRGALWRG QMTNRTRQGE DLPEAVLVAP IRASDGSIVN
YVELKQDLSE RMRAERQIHA LAHFDALTGL PNRLSLTQRL RALAREFREG GKGGEPRHGL
LLLDMDRFTA FNDVRGTVRG DALLGALALR LADALPDGVL LARMGADEFA VLLEKAGQEA
AEVDQHMRAL AQVLQDALER PLWLEETGEE VQASCSIGAA SFAASRTDSG GHDVLRRAGV
ALHQAKQAGL GQVVIFQPDM AEAVGKRFRI EKDLRRAIPA GELQPYLQSQ VDHMGRCVGA
EVLVRWNHPR LGMVEPGDFI PVAEESDLIV QLGDWMLEQA CRMLVRPEFV QQGWRLSVNV
SWRQFRQPDV VDKLKRTLAA TGADPRRLTL EVTESVVMRD VDEARERMAE LQLLGVEMGL
DDFGTGYSSL AYLQRLPFRE LKIDKSFVQD CHTSPGNAAM VEAILLLARR LRLRVVAEGV
ETEEQAGTLR AWNQDVLFQG YHYGRPLPAV EWVDLQLGAP AGV
|
|---|
| |