Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_2417 |
Symbol | |
ID | 5747980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 2667819 |
End bp | 2669258 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641297499 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001563440 |
Protein GI | 160897858 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.118165 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAGCC CCCGTTTTCC CCGCACCGTG ACCGCCGCGC TCTGCGCCGC CGTTCTGGCC GGCTGCGCGA GCGGGCCGGC CTATGTAAAG CCGGCCATGG AACTGCCCGC GGCCTATAGC GAACTGCCAG GCTGGACGCA GGCACGGCCC GACGCCGAGG GCCCCAAGGG CGACTGGTGG ACGGCTTTCA GCGACCCGCT GCTCGACGAA CTGGGCCCCC AGGTGGCCGT CTCCAACCAG AACGTGCGGC TCGCGTATGC CAATTACCAG AAAGCCACGG CCGCCATCCA GGCAGCGCGC GCAGCGCTGT TCCCTACATT GGGCATCAAC GCCTCCGCGT CACGCCAGCA GGCCGGCTCC GGGGGCCCGG CCACCAGCAA GTCCGTGCAG GCGGCGGTGA GCTGGTCCCC CGACCTCTGG GGCCAAGTGC GCGACAGCGT GCAGCAGAGC CAGGCGCTGG CCCAGGTGAG CGCGGCCACC CTGGCCAACG CAACGCTGTC CGCGCAGGTG GCGCTGGCCA CGGCGGTGAT GGAATTGCGC GTGTCCGACG AGAACGCCCG CCTGCTGCAG CGCGCCGTGG ACTCCTACCG CGAAAGCCTG CGCGTGGTCA CCGAGCAGGA CAGCGCGGGC ACCGTGCCGC CCTCCAACCT GTATGCGGCG CGCACCCAGC TGGAGACTGC CCAGGCCAGC CTCGTGGCCG TGGGCATGGC CCGCGCCCAG TATGCGCACG CCATCGCCGT CCTCGTGGGG AAGACCCCGG AAGAAATGCA GATCGCCCCC GCGCCCACCA TGCCGGATCT TCCGGACGTG CCCGTCGGCC TGCCGTCCAC GCTCTTGCAG CGGCGCCCCG ACATTGCCGC CGCCGAACGC CAGATGGCGG CGGACAACGC GGCCATCGGC GTCGCGCATG CGGCCTTCTA CCCCTCGGTC ACGCTGTCGG CCGCCGGCGG CTTGGCGGGT GCGCTCGGCG CCAGCAACCT GATCTGGTCG CTGGGCGCAT CGCTGGCCGC CAGCATCTTC GATGGCGGCG CGCGCAGCGC GCAGCTGAAC GAGGCGCGCG CCCAGTACGA TGCATCGGTG GCCAGCTACC GCGGCACCGT GCTCACGGCG TTGCAGGATG TGGAAAATGA TTTGTCGTCA CTTCGCATAC TGCAACAGCA GCACCAGGTG CTGGACGCCG CCGTGCAGGA CGCCACGCAA AGCGCGCGCA TCGCGCTGAA CGAGTACGAA GCCGGCACTG TGGACTACAC CACCCTGGCC ACTGCCCAGG CCACGCAGAT CAGCAACCAG CAGTCCCGGC TCAACGTGCG GCTGCAGCAA CTGGTGAGCA CCGTGACGCT GATCGGCGAC CTGGGCGGCG GATGGGATGC TGCGCGGCTG GATGCCATGG TGCCGCCGCA CGCTGCGGAC GCAAAGCGGC CCGGCAGCGC GCAGCCCTGA
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Protein sequence | MTSPRFPRTV TAALCAAVLA GCASGPAYVK PAMELPAAYS ELPGWTQARP DAEGPKGDWW TAFSDPLLDE LGPQVAVSNQ NVRLAYANYQ KATAAIQAAR AALFPTLGIN ASASRQQAGS GGPATSKSVQ AAVSWSPDLW GQVRDSVQQS QALAQVSAAT LANATLSAQV ALATAVMELR VSDENARLLQ RAVDSYRESL RVVTEQDSAG TVPPSNLYAA RTQLETAQAS LVAVGMARAQ YAHAIAVLVG KTPEEMQIAP APTMPDLPDV PVGLPSTLLQ RRPDIAAAER QMAADNAAIG VAHAAFYPSV TLSAAGGLAG ALGASNLIWS LGASLAASIF DGGARSAQLN EARAQYDASV ASYRGTVLTA LQDVENDLSS LRILQQQHQV LDAAVQDATQ SARIALNEYE AGTVDYTTLA TAQATQISNQ QSRLNVRLQQ LVSTVTLIGD LGGGWDAARL DAMVPPHAAD AKRPGSAQP
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