Gene Daci_2417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2417 
Symbol 
ID5747980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2667819 
End bp2669258 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content71% 
IMG OID641297499 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001563440 
Protein GI160897858 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.118165 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGCC CCCGTTTTCC CCGCACCGTG ACCGCCGCGC TCTGCGCCGC CGTTCTGGCC 
GGCTGCGCGA GCGGGCCGGC CTATGTAAAG CCGGCCATGG AACTGCCCGC GGCCTATAGC
GAACTGCCAG GCTGGACGCA GGCACGGCCC GACGCCGAGG GCCCCAAGGG CGACTGGTGG
ACGGCTTTCA GCGACCCGCT GCTCGACGAA CTGGGCCCCC AGGTGGCCGT CTCCAACCAG
AACGTGCGGC TCGCGTATGC CAATTACCAG AAAGCCACGG CCGCCATCCA GGCAGCGCGC
GCAGCGCTGT TCCCTACATT GGGCATCAAC GCCTCCGCGT CACGCCAGCA GGCCGGCTCC
GGGGGCCCGG CCACCAGCAA GTCCGTGCAG GCGGCGGTGA GCTGGTCCCC CGACCTCTGG
GGCCAAGTGC GCGACAGCGT GCAGCAGAGC CAGGCGCTGG CCCAGGTGAG CGCGGCCACC
CTGGCCAACG CAACGCTGTC CGCGCAGGTG GCGCTGGCCA CGGCGGTGAT GGAATTGCGC
GTGTCCGACG AGAACGCCCG CCTGCTGCAG CGCGCCGTGG ACTCCTACCG CGAAAGCCTG
CGCGTGGTCA CCGAGCAGGA CAGCGCGGGC ACCGTGCCGC CCTCCAACCT GTATGCGGCG
CGCACCCAGC TGGAGACTGC CCAGGCCAGC CTCGTGGCCG TGGGCATGGC CCGCGCCCAG
TATGCGCACG CCATCGCCGT CCTCGTGGGG AAGACCCCGG AAGAAATGCA GATCGCCCCC
GCGCCCACCA TGCCGGATCT TCCGGACGTG CCCGTCGGCC TGCCGTCCAC GCTCTTGCAG
CGGCGCCCCG ACATTGCCGC CGCCGAACGC CAGATGGCGG CGGACAACGC GGCCATCGGC
GTCGCGCATG CGGCCTTCTA CCCCTCGGTC ACGCTGTCGG CCGCCGGCGG CTTGGCGGGT
GCGCTCGGCG CCAGCAACCT GATCTGGTCG CTGGGCGCAT CGCTGGCCGC CAGCATCTTC
GATGGCGGCG CGCGCAGCGC GCAGCTGAAC GAGGCGCGCG CCCAGTACGA TGCATCGGTG
GCCAGCTACC GCGGCACCGT GCTCACGGCG TTGCAGGATG TGGAAAATGA TTTGTCGTCA
CTTCGCATAC TGCAACAGCA GCACCAGGTG CTGGACGCCG CCGTGCAGGA CGCCACGCAA
AGCGCGCGCA TCGCGCTGAA CGAGTACGAA GCCGGCACTG TGGACTACAC CACCCTGGCC
ACTGCCCAGG CCACGCAGAT CAGCAACCAG CAGTCCCGGC TCAACGTGCG GCTGCAGCAA
CTGGTGAGCA CCGTGACGCT GATCGGCGAC CTGGGCGGCG GATGGGATGC TGCGCGGCTG
GATGCCATGG TGCCGCCGCA CGCTGCGGAC GCAAAGCGGC CCGGCAGCGC GCAGCCCTGA
 
Protein sequence
MTSPRFPRTV TAALCAAVLA GCASGPAYVK PAMELPAAYS ELPGWTQARP DAEGPKGDWW 
TAFSDPLLDE LGPQVAVSNQ NVRLAYANYQ KATAAIQAAR AALFPTLGIN ASASRQQAGS
GGPATSKSVQ AAVSWSPDLW GQVRDSVQQS QALAQVSAAT LANATLSAQV ALATAVMELR
VSDENARLLQ RAVDSYRESL RVVTEQDSAG TVPPSNLYAA RTQLETAQAS LVAVGMARAQ
YAHAIAVLVG KTPEEMQIAP APTMPDLPDV PVGLPSTLLQ RRPDIAAAER QMAADNAAIG
VAHAAFYPSV TLSAAGGLAG ALGASNLIWS LGASLAASIF DGGARSAQLN EARAQYDASV
ASYRGTVLTA LQDVENDLSS LRILQQQHQV LDAAVQDATQ SARIALNEYE AGTVDYTTLA
TAQATQISNQ QSRLNVRLQQ LVSTVTLIGD LGGGWDAARL DAMVPPHAAD AKRPGSAQP