| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2397 |
|---|
| Symbol | |
|---|
| ID | 5747960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2646921 |
|---|
| End bp | 2648507 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641297479 |
|---|
| Product | cytochrome bd ubiquinol oxidase subunit I |
|---|
| Protein accession | YP_001563420 |
|---|
| Protein GI | 160897838 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.174405 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTCG ACATCGTCGA TCTATCGCGG CTGCAGTTCG CGGTAACGGC GCTCTACCAC
TTCCTGTTCG TGCCGCTGAC CATCGGCCTG GCCGTGATCA TCGCCATCAT GGAGACCGTC
TACGTGATGA CGGGCCGCAC CATCTGGCGC GACATGACGA AGTTCTGGGG CACGTTGTTC
GGCATCAACT TCGCCATGGG CGTGGCCACG GGCATCGTGA TGGAGTTCCA GTTCGGCATG
AACTGGAGCT ACTACAGCCA CTACGTGGGC GACATCTTCG GCGCGCCGCT GGCCATCGAA
GGGCTGATGG CCTTCTTCCT GGAAGCCACC TTCGTGGGCC TGTTCTTCTT CGGCTGGGAC
CGCCTGAGCA AGGTCGGCCA TCTGGTGACC ACCTGGTGCG TGGCCCTGGG CTCGAACTTC
TCGGCGCTGT GGATCCTGAT CGCCAATGGC TGGATGCAGA ACCCCGTGGG CGCGGCGTTC
AACCCGCAGA CCATGCGCAT GGAGGTCACC GACTTCTTCG CGGTGCTGAC CAACCCCGTG
GCCCAGGCCA AGTTCGTGCA CACGGTATCG GCCGGCTACG TGACGGCGGC CATCTTCGTG
CTGGGCGTCT CGGCCTGGTA TCTGCTCAAG GGCCGGCACA TCCAGCTGGC GCGCCGCTCC
ATGACGGTGG CCACCTCGTT CGGCCTGGCC GCCGCGCTGT CGGTGGTGGT GCTGGGCGAT
GAAAGCGGCT ACCTGTCCTC GGAGCACCAG AAGATGAAGC TGGCCGCCAT CGAGGCCATG
TGGGACACCG AGCCCGCACC GGCCGCCTTC ACGGCCTTCG GCTTCCCCGA CAAGGCCGCA
CGCGAGACGC ACTACGCCGT GCACATTCCC TGGGTCATGG GCCTGATCGG CACGCGCTCG
CTGACCAGCG AGATCCCCGG CATCAACGAC CTGGTCCAGC GCACCGAGCA GTACATCCGC
AACGGCATCG AGGCCTATGG CGCGCTGGAG GCCATCCGCG CCGCCGGCCC CACGGGCCAG
GTGCCGGCCG AGGCCAAGGC CGTCTTCGAG GACAAGGGCG GGCAACTGGG CTACGCGCTG
CTGCTCAAGC GCTACGTGGA CGACCCGCGC CAGGCCACGG ACGCGCAGAT CGCCCAGGCC
GCCTGGGACA CCGTGCCGGC CGTGGGGCCG CTGTTCTGGG CCTTCCGCAT CATGGTGGGG
CTGGGCATGT TCTTCATCGC GCTCACGGCC GCGTTCTTCT GGCTGTCGGT GCGGCGCAGG
CTGGACGCCC ATCCGTGGAT GCTCAAGCTG GCCGTGATCG CCATTCCCAT GCCCTGGATC
GCGGCCGAGT GCGGCTGGAT CGTGGCCGAG GTGGGCCGCC AGCCCTGGAT CATCGAAGGC
GTGCTGCCCA CGGCGCTGGC CGTCTCCAAC CTGGGCGCGG GCACGCTGCT GCTGACTATT
GCAGGCTTCA TCGCCATCTA CTCCGTGCTC TTCGTCATCG AGATGAAGCT CATGGTGAAG
GCCATCCGCA AGGGACCGCA GGAGGAAAGC GCACCGCACC TGACCACCTA CTTCCCTCTG
ATGCAAAAAC TCGCCCGCGG GCAATGA
|
|---|
| Protein sequence | MDLDIVDLSR LQFAVTALYH FLFVPLTIGL AVIIAIMETV YVMTGRTIWR DMTKFWGTLF
GINFAMGVAT GIVMEFQFGM NWSYYSHYVG DIFGAPLAIE GLMAFFLEAT FVGLFFFGWD
RLSKVGHLVT TWCVALGSNF SALWILIANG WMQNPVGAAF NPQTMRMEVT DFFAVLTNPV
AQAKFVHTVS AGYVTAAIFV LGVSAWYLLK GRHIQLARRS MTVATSFGLA AALSVVVLGD
ESGYLSSEHQ KMKLAAIEAM WDTEPAPAAF TAFGFPDKAA RETHYAVHIP WVMGLIGTRS
LTSEIPGIND LVQRTEQYIR NGIEAYGALE AIRAAGPTGQ VPAEAKAVFE DKGGQLGYAL
LLKRYVDDPR QATDAQIAQA AWDTVPAVGP LFWAFRIMVG LGMFFIALTA AFFWLSVRRR
LDAHPWMLKL AVIAIPMPWI AAECGWIVAE VGRQPWIIEG VLPTALAVSN LGAGTLLLTI
AGFIAIYSVL FVIEMKLMVK AIRKGPQEES APHLTTYFPL MQKLARGQ
|
|---|
| |