| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2379 |
|---|
| Symbol | |
|---|
| ID | 5747942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2623792 |
|---|
| End bp | 2625513 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641297461 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001563402 |
|---|
| Protein GI | 160897820 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTGGC TGTTCCTGAC CGAGGGGGTG TCCCGGTGGA TACCTGCGCA CTGGCGCGGC
TCGACATTTG TGTGCTGGCG CGGCCCGACA TTTGCGTGCT GGCTGGCTTC GCTGCTGCCC
TGCATGGCGC AGGGTCAGGT GCCTGCGGCT GCCCCGGATG GCGTCGCGTC GGCGCAATTG
GCCGATGAGG GCGTCTGGTT CGCTGGATGG GATGCCCTCG GCCCGTGGGG TGCCGGTGCG
TTCGTGGTGT TCCTGCTGGT GTGCTCGGTG CTCTACATCC GCATGCGCTG CAAGGCGCAG
CGCCTGACGC AGTCGCTCAA GCAGAGCAAT GAGAAATTGC TGCGCGCCAA TGTGAAGCTC
AAGCGCATCG CCTTCCGAGA CCCGTTGACC GGTACGGCCA ACCGGGCGTT GTTCGAGTAC
CGGCTGGGCC GCACGATTGC GCGCGCCGAC AGCTCGGTGG AGCAGCCGGG GCCCTGCGGG
CCGGTGCGCG TGGGCCTGCT GTACATCGAC CTGGATGGAT TCAAGCCCAT CAACGATGTG
GAAGGCCATG CCGCAGGCGA CGCGCTGCTG TGTCAGGTGG CCGTGCGCCT GGGCCATATG
ACGCGCAAAT CGGACACGCT GGCGCGCGTG GGTGGCGACG AGTTCGTGCT GCTGCTGGGC
TGCCTGGCTT CGGTGGACGA CGCCGTGGCC ATGGCAGGCC GCGTGCAGAA GGCCTTGAGC
CAGCCGTTCG ACCTGCCAGG AAAAGCGGTC TCCATCAGCA GCTCCATCGG CGTGGCCATC
TATCCCGACC ATGGCAAGAA GGAAAAGCTC ATGGCGGCGG CCGATGCCGC CATGTACACG
GCCAAGCGTG CCGGCGGGAA CACCTACGCC ATCTTCAAGG AAAGCATGCG CCAGGGCGTG
GCCGCGCAGT TCGACCTGCA GCAGGCCCTG CGCCGCGCCG TGGCCAGCCA GCAGCTGGTG
CTGTTCTATC AGCCCAAGAT CGATACCCGC ACGGGCCGCA TCCGCAGCGT GGAGGCGCTG
GCGCGCTGGA ACCACCCGCA GTTCGGCCTG ATCAGTCCCC GCGTGTTCAT CCCGCTGGCC
GAGCGCTTCG GCCTGATCAG CGAGATCGGC GACTGGGTCA TCGACGAGGC CTGCCGCCAG
ACCGCGCAAT GGGCGCGCGA GCGGCGCTTC ATGCGGGTGT CCATCAATAT CTCGGGCTAC
CAGCTCTTTC AGACGCGGCT GGCGCAGTTC ATCGCCGAGG CGATCGCAAG GCACCACATC
CGGCCCGAGC AACTGGTCTT CGAGATCACC GAGTCCGTGG CCATGGAGGA CGACAAGACC
ACCATGGCCG TGATTGCCGA ACTCACGGGC ATGGGCGTGC AGATCTCCAT CGACGACTTC
GGCACCGGCT ACTCCAGCCT GGCCCTGCTG CGCCAGCTGT GCGCCGACGA GGTGAAGATC
GACCGCAGCT TTGTGCGCGA CGTGGCCCTC AAGAGCGATG CGCGGGCGGT GGTCGATGCC
ATCGTGCGCC TGGCCCATGC GCTGGAGCTG CGCGTGGTGG CCGAAGGCGT GACCAACCAG
CAGCAGCGCG AAGTGCTGCA GGCGCTGGGC TGCGACGAGC TGCAGGGCTT TTACTTCGCC
CGCCCCATGG ATGCCCAGGC GCTGATCGCC AGCGAAATCT GGACCTCCGA CGGCTTCGAG
CCCGTGCGGT TCTCGCGCTC TTCCTACATA GACAACCTGT AG
|
|---|
| Protein sequence | MHWLFLTEGV SRWIPAHWRG STFVCWRGPT FACWLASLLP CMAQGQVPAA APDGVASAQL
ADEGVWFAGW DALGPWGAGA FVVFLLVCSV LYIRMRCKAQ RLTQSLKQSN EKLLRANVKL
KRIAFRDPLT GTANRALFEY RLGRTIARAD SSVEQPGPCG PVRVGLLYID LDGFKPINDV
EGHAAGDALL CQVAVRLGHM TRKSDTLARV GGDEFVLLLG CLASVDDAVA MAGRVQKALS
QPFDLPGKAV SISSSIGVAI YPDHGKKEKL MAAADAAMYT AKRAGGNTYA IFKESMRQGV
AAQFDLQQAL RRAVASQQLV LFYQPKIDTR TGRIRSVEAL ARWNHPQFGL ISPRVFIPLA
ERFGLISEIG DWVIDEACRQ TAQWARERRF MRVSINISGY QLFQTRLAQF IAEAIARHHI
RPEQLVFEIT ESVAMEDDKT TMAVIAELTG MGVQISIDDF GTGYSSLALL RQLCADEVKI
DRSFVRDVAL KSDARAVVDA IVRLAHALEL RVVAEGVTNQ QQREVLQALG CDELQGFYFA
RPMDAQALIA SEIWTSDGFE PVRFSRSSYI DNL
|
|---|
| |