| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2315 |
|---|
| Symbol | |
|---|
| ID | 5747878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 2547285 |
|---|
| End bp | 2548670 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641297397 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001563338 |
|---|
| Protein GI | 160897756 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.44899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATGC TCAAGACCAG CGCGCTGGCA TGCGCCGTGG CCCTTGCGGG CTGCGGCGCC
ATCACGCGCC CCCCCTACGA AGCGCCACAG GTGGCGCTGC CCGCGCAGTT CGAACATGCG
CAGGCATCGT CCCCGGCAGC CACGCCCACG CCCATGACCG ATGCCTGGTG GCACGGCTTC
GGCGATCCAC GGCTCGATGC CTGGATTGAC CTGGCGCTGG CGCGCAACCC TGACATGGCC
ACGGCCGGCA TCCGCGTGCG GCGTGCCGCG CTGCAGGCGC AACTGGCAGG CCATGCGCTG
CTGCCCCAGC CCAGCGGCAG CGCAGGCACG GGCGCCAGCC GCCCGCTGTC GGGCAGCCAG
CGCAGCACCC TGGAGAACGC CAGCGCCACA CTGGGCGTGG CCTGGGAGCT GGACCTGTTC
GACCGGCTGG GCGCGCAGCG CGATGCCGCC GTCTTCGAAG CACAGGCCAG CGTGCAGGAC
AGGAATGCCG TGGCGCTGTC GCTGACCACC ACCACGGCCA GCCTGTACTG GCAACTGGCG
CTGGCCAACG AGCGCCTGGA CATGTCACGC CAAAGCCTGG AGTACGTGCG CCGCACCATC
GACCTGGTGC AGGCCCAGTA CCGCAGCGGC GCAGTGTCCG GCCTGGAGCT GCGCGAGGCC
CGGCAGGCCC TGGCCGAGCA GCAGGCCCTG CTGAGCCAAT ACACCCAGGC CCGCGCCGAA
CTGCGCCAGG CATTGGCCGA ATTGCTGCAG GGCGCCGAGC CGCCCGGTGG CGAGCCCCAG
GCGCTGCCCG TGGCCGACCT GCCCGCCGTG CAGCCAGGCC TGCCCGCCGA CCTGCTGGGG
CGCCGCCCCG ACCTGCGCGC CGCCGAACTG CGGCTGCGCG GCGCCCTGGC CGGCAGCGAT
GCCACGGCCG CCAGCTACTA CCCGCGGCTA TCGCTCACCG GCAGCCTGGG CACCTCCAGC
AGCACCCTGC TCGATGTGCT GGCCAATCCC GTGGCGGCCC TGGGCGCCAA CCTGGCCCTG
CCGTTTCTCA ATGTGCGCGA GATGCGGCTG AACACCGCCA TTGCACGCAG CCAGTACGAA
GAGGCGGTGG TCAACTTCCG CAAAACGCTG TACGCCGCGT TGGCCGAAAC GGAAAAATCC
CTGTCCGCCC GCACCGAACT GGCCCTCCAG GAAGAGGCCC AGCAGCGCGC CACGCAGGAA
TCCGTGGAAA TCACGCGGCT GTACGAGGCG CGCTATCGCG CCGGCCAGGT GCCGCTGCGC
ACCTGGCTGG ACGCCCAAGA GCGCCGCCGC GCAGCGCAGC TGGCCCTGTC CGCGCTGCAC
CTGGCACGCC TGCAGAACCA GCTCACGCTG CACAAGGCGC TAGGTGGAGG GTGGCCGGCT
TCCTGA
|
|---|
| Protein sequence | MHMLKTSALA CAVALAGCGA ITRPPYEAPQ VALPAQFEHA QASSPAATPT PMTDAWWHGF
GDPRLDAWID LALARNPDMA TAGIRVRRAA LQAQLAGHAL LPQPSGSAGT GASRPLSGSQ
RSTLENASAT LGVAWELDLF DRLGAQRDAA VFEAQASVQD RNAVALSLTT TTASLYWQLA
LANERLDMSR QSLEYVRRTI DLVQAQYRSG AVSGLELREA RQALAEQQAL LSQYTQARAE
LRQALAELLQ GAEPPGGEPQ ALPVADLPAV QPGLPADLLG RRPDLRAAEL RLRGALAGSD
ATAASYYPRL SLTGSLGTSS STLLDVLANP VAALGANLAL PFLNVREMRL NTAIARSQYE
EAVVNFRKTL YAALAETEKS LSARTELALQ EEAQQRATQE SVEITRLYEA RYRAGQVPLR
TWLDAQERRR AAQLALSALH LARLQNQLTL HKALGGGWPA S
|
|---|
| |