| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2259 |
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| Symbol | |
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| ID | 5747822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 2485862 |
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| End bp | 2487388 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641297343 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001563284 |
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| Protein GI | 160897702 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.324035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.22709 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCGAA TCCGAAAGCC CAAGCTGATG CAGTTCAAGA CACTTCACTC CCCGGCGATC
TGGCTGGCCG CCGCGCTGCT GGCCGGTTGC TCCACGCAGA GCGCCTACCA GCGCCCCGCA
CTCGAGGTGC CGGCCCAGTT CAAGGAAGCC ACGCCAGAGG CGGCCGAGGC CGGCATCTGG
CGGCCCGCAG ATCCGTCGCG CGCGCAAGTG CCCGACAACT GGTGGGAGCT GTTCGGCGAC
GAGCAGCTCA ACCGCCTGCA GCAGCAGGCC GCCACCGGCA ACCAGAGCAT TGCCCAGGCC
GCCGCGCGCC TGCGTGCCGC GCAGGCGGCC GTGGCCAGCA GCCAGGCCGG GCTGTTCCCC
ACGCTGGGCA GCACGGCCGG CGCCACGCGC TCGCGCAGCG GCGGGGCATC GGGTGCATCA
GGCACGGGCG GCAACACCGG CAGTAGCGGC AGTAGCGGCA ACATCTCGAC CAACTACTCG
CTTGGCCTGA ACGCCAGCTG GGAGCTGGAC CTGTGGGGCC GCGTGTCGGG CACGGTCAGC
GCCAGCCAGG CCAGCGCCCA GGCCAGCAGC GACGACCTGG CCGCCGCGCG CCTTTCGGCC
CAGGCATCGA TCACGCAGAC CTATTTCTCG CTGCGCGCGG CCGATGCCAG CGTGCGGCTG
CTGCAGGAAA CGCTGCAGAG CTACGAGCAA AGCCTCAAGC TCACCAACAA CCGCTATCGC
GCGGGCGTGG CCTCGTCGGC CGATGTGGCC CAGGCTGAGG CGCAGTACAA AAGCACCCAG
GCCCAGCTCA TCGAGGCGCA GACCAGCCGC GCCCAGCTGG AGCACGCCCT GGCCGCGCTG
CTGGGCCTGC CGCCGGCGGC CTTCAGCCTG GAGGCCGGCG CCGAGCTGCC GCCGCCGCCC
GAGGTGCCGG CCATGCTGTC GTCCCAACTG CTGGAGCAGC GCCCCGACAT TGCAGCGGCC
GAGCGCCGCG TGGCCGCCGC CAATGCCCAG GTGGGCGTGG CGCGCGCGGC CTTCTTCCCG
GCGCTCACGC TGTCGGCCAC GGCCGGCTAC CGGGGTGCAT CGCTGTCCAA CCTGGTGAGT
GCGCCCAACC TGTTCTGGTC GCTGGGCCCG TCGCTGGCGC TGGCGCTGTT CGACGGCGGC
GCGCGCACGG CGGCCGTGGA ATCGGCGCGT GCCTCGCTGG ACCTGGCCGC CGCCACCTAC
CGCCAGACCG TGCTGACGGC GTTGCAGGAG GTGGAGGACA ACCTGGTCAC CGCATCCGCC
CTGGCGCGCG AGCAGCAGGT GCAGATCGAG GCCGTGGCCG CCGCGCAGAA GGCGCTGGAT
GTCGTCAACA ACCAGTACCG CGCGGGCACG GTGGCCTATC TGAATGTGCT CAGCGCTCAG
ACCACGGTGC TGTCGGCGCG GCGCAGCCTG ATCGATGTGC GCAACCGGCG GCTGGCCGCC
GTCAACACCT TGCTCAAGAA CGTGGCCGGG CGCTGGCAGC CGCTGGGGCC GGCCTCCGTG
CAGGGACCGC AGGCTGTCGC GCGCTGA
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| Protein sequence | MNRIRKPKLM QFKTLHSPAI WLAAALLAGC STQSAYQRPA LEVPAQFKEA TPEAAEAGIW
RPADPSRAQV PDNWWELFGD EQLNRLQQQA ATGNQSIAQA AARLRAAQAA VASSQAGLFP
TLGSTAGATR SRSGGASGAS GTGGNTGSSG SSGNISTNYS LGLNASWELD LWGRVSGTVS
ASQASAQASS DDLAAARLSA QASITQTYFS LRAADASVRL LQETLQSYEQ SLKLTNNRYR
AGVASSADVA QAEAQYKSTQ AQLIEAQTSR AQLEHALAAL LGLPPAAFSL EAGAELPPPP
EVPAMLSSQL LEQRPDIAAA ERRVAAANAQ VGVARAAFFP ALTLSATAGY RGASLSNLVS
APNLFWSLGP SLALALFDGG ARTAAVESAR ASLDLAAATY RQTVLTALQE VEDNLVTASA
LAREQQVQIE AVAAAQKALD VVNNQYRAGT VAYLNVLSAQ TTVLSARRSL IDVRNRRLAA
VNTLLKNVAG RWQPLGPASV QGPQAVAR
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