Gene Daci_2232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2232 
SymbolhemC 
ID5747795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2447432 
End bp2448370 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content71% 
IMG OID641297316 
Productporphobilinogen deaminase 
Protein accessionYP_001563257 
Protein GI160897675 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.495959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0113482 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACCA AACCACTTCT CCCCCACTCC ATCGTGATCG CCACGCGCGA GAGCCAGCTG 
GCACTGTGGC AGGCCGAGCA TGTCCAGGCG CTGCTGCGCG CCCGGGGGCA TGAAGTGGAA
TTGCTGGGCA TGACCACCAA GGGCGACCAG ATCCTGGACC GCACGCTGTC CAAGGTCGGC
GGCAAGGGCC TGTTCGTCAA GGAGCTGGAA GTGGCGCTGG AAGAAGGACG CGCCCACATC
GCCGTGCACT CGCTCAAGGA CGTGCCCATG GAGCTGCCCG AAGGCTTTGT GCTGGCCTGC
GTGATGGAGC GCGAAGACCC GCGCGACGCC TTTGTCTCCA ATCGCTACGC CACGCTGGCC
GAGCTGCCGC AGGGCGCCGT CGTCGGCACA TCGAGCCTGC GCCGCCAGGC ACTGCTGCAG
GCCCTGCGCC CGGACCTGAA GATAGAGCCG CTGCGCGGCA ACGTGAACAC CCGCCTGCGC
AAGCTGGACG AAGGCCACTA CGACGCCATC GTGCTGGCCG CCGCAGGCCT GATGCGCCTG
GGCCTGGCCG ACCGCATCCG CGCCAGGTTC GAGCCCACCG GCATGCTGCC GGCCGCTGGC
CAGGGCGCGC TGGGCATCGA GGTGCGCGCC GACCGCCAGG ACCTGATCGA CGCGCTGGCC
CCGCTGGCCC ACCAGACCAC CTGGCTGACC GTGACCGCCG AGCGCGCCGT CAGCCGCTGC
ATGGGCGGCA GCTGCTCCAT GCCGCTGGCG GCGCACGGCA CATTCGACGG CCGGCAACTG
CGCCTGGACG CAGCCTGGGG AGACCCGCAA GGCCGGCTGC CGCTGGTGCA GGTGCACGCC
GATGCCACCG TCACCGACTT CGCCAGCGCC GACGCGCTGG GCCAGCACGT GGCTGCGCTG
CTGCAGGCGG CGGGCGCCCA ACCGGCCCCC AAGCTCTAG
 
Protein sequence
MNTKPLLPHS IVIATRESQL ALWQAEHVQA LLRARGHEVE LLGMTTKGDQ ILDRTLSKVG 
GKGLFVKELE VALEEGRAHI AVHSLKDVPM ELPEGFVLAC VMEREDPRDA FVSNRYATLA
ELPQGAVVGT SSLRRQALLQ ALRPDLKIEP LRGNVNTRLR KLDEGHYDAI VLAAAGLMRL
GLADRIRARF EPTGMLPAAG QGALGIEVRA DRQDLIDALA PLAHQTTWLT VTAERAVSRC
MGGSCSMPLA AHGTFDGRQL RLDAAWGDPQ GRLPLVQVHA DATVTDFASA DALGQHVAAL
LQAAGAQPAP KL