Gene Daci_2230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2230 
Symbol 
ID5747793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2445470 
End bp2446612 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content72% 
IMG OID641297314 
Productprotein of unknown function DUF513 hemX 
Protein accessionYP_001563255 
Protein GI160897673 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2959] Uncharacterized enzyme of heme biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.555979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00638141 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTTCCG ACGCAGCGCA AGACCGCCCC ACCCCGCAGG ACCTGACGCC CCCAGCCTCC 
GCCGCAGCAT TCGCTGCCGG CTCCGCCCAA AGCAGCCCCG CTGCAGACCT GCGCAGCGGC
TCCTCTGCCC TGGTCCTGGG CGTGGGCGCC GTGGCCGTGG CGGCGCTCAT TGCCTGCGGC
ATGCTCTGGC AGCGCCTGGG CAATATCCAG GAACAATTGG CCCGGCAGTC CGCGCAGTCC
GGCTCCCAGT CGGTCGAGGC CCGCACCCTG GCGCGCGACG CCCAGGACCT GGCCCGCGAC
AGCGCGGCGC GCACCTCGGT CATGGAAGCG CGCATTGCCG AGCTGTCGCT GCAGCGCACG
CAGCTCGACG AACTCCTGCA AAGCATGTCG CGCTCGCGCG ACGAGAACCT GGTGGTGGAC
ATAGATTCCT CCATCCGCCT GGCCCAGCAG CAGGCCGAGC TGTCCGGCAG CCTGCAGCCG
CTGGTGGCCA CGCTCAAGAA CGCCCGCCAG CGCATAGAGC GCGCCGCACA GCCCCGTCTG
GCTCCCGTGA TGCGGGCGCT GGACCGCGAC CTGGAGCGGC TGGCCCGCAT GAGCGTGACC
GACACCGCCG GCCTGCTCAC CCGCATCGAG GACCTGGTGC GCCTGGTCGA CGAGATGCCC
CTGCTCAACG CCGTGGCCCA GCCACGCGCC AGCCGCCATC GCGGCGTGGC CGGCCAGGCG
GCCCGCCAGC CCGAGCCCGC CCCCATCGAG GGCAGCCCCA CCGAGTGGAG CTGGTGGCAG
TCCTGGGGCG AGCGCGGCTG GACGGCCGTG CGCGAAGAGG CCCAGGACCT GCTGCGCGTC
AGCCGCATCG ACCACCCGGA CGCCATCTTG CTGGCGCCCG AGCAGGCCTA TTTCCTGCGC
GAGAACCTCA AGCTCAAGCT GCTGAACTCG CGCCTGGCCC TGCTGTCGCG CCAATGGGAT
GCGGCGCGTG CCGACCTGGC CGCCTCGGGC ATGGCCGTGA ACAAATACTT CGATCCTGCC
GCGCGCCGCA CCCAGATCGT GCAGGCCCAG CTGCAGCAGA TCCAGGCCAA TCTGCGCACC
ACCGAACAGC CGGCGCTGCA GGAAACCCTG GCGGCGCTGG CAACGGCCGC CGCAGGCCGC
TGA
 
Protein sequence
MSSDAAQDRP TPQDLTPPAS AAAFAAGSAQ SSPAADLRSG SSALVLGVGA VAVAALIACG 
MLWQRLGNIQ EQLARQSAQS GSQSVEARTL ARDAQDLARD SAARTSVMEA RIAELSLQRT
QLDELLQSMS RSRDENLVVD IDSSIRLAQQ QAELSGSLQP LVATLKNARQ RIERAAQPRL
APVMRALDRD LERLARMSVT DTAGLLTRIE DLVRLVDEMP LLNAVAQPRA SRHRGVAGQA
ARQPEPAPIE GSPTEWSWWQ SWGERGWTAV REEAQDLLRV SRIDHPDAIL LAPEQAYFLR
ENLKLKLLNS RLALLSRQWD AARADLAASG MAVNKYFDPA ARRTQIVQAQ LQQIQANLRT
TEQPALQETL AALATAAAGR