| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2155 |
|---|
| Symbol | |
|---|
| ID | 5747717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2368175 |
|---|
| End bp | 2369689 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641297238 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001563180 |
|---|
| Protein GI | 160897598 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.659506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCT CTTTCTCCAA TCTCCAGCTG GCTGAGTCCC TGGCGCGCGC CGTGGCCGAC
ATGGGCTACG AGTCCATGAC GCCCATCCAG GCACAGGCCA TTCCGGTCGT TCTGACCGGC
AAGGATGTCA TGGGCGCCGC CCAGACCGGC ACAGGCAAGA CGGCGGCGTT CTCGCTGCCG
TTGCTGCAGC GGCTGATGCG CCACGAAAAT ACCTCCGCTT CGCCTGCACG CCACCCCGTG
CGGGCGTTGG TGCTTTTGCC CACACGCGAA CTGGCGGACC AGGTGGCCCA GCAGATCGCC
CAGTATGCGA AGTACACCAA GCTGCGCAGC ACCGTGGTGT TCGGCGGCAT GGACATGAAG
CCGCAGACGC TGGAGCTCAA GAAGGGCGTC GAGGTGCTGG TGGCCACGCC GGGCCGTCTG
CTTGACCACA TCGAAGCCAA GAACGCCGTG CTCAACCAGG TCGAGTACGT GGTGCTTGAC
GAGGCAGACC GCATGCTGGA CATCGGCTTT CTGCCCGATC TGCAGCGCAT ACTGTCCCAT
CTTCCCAAGA CACGCACCAC CTTGCTGTTC AGCGCCACCT TCTCGCCCGA GATCAAGCGC
CTGGCCAGCA GCTACCTGCA GGACCCCGTC ACCATCGAAG TGGCGCGCCC CAACGAGACG
GCGTCCACGG TGGAGCAGCG CTTCTACAGC GTCAGCGACG ACGACAAGCG CTATGCGCTG
CGCTCCCTGC TCAAGCAGCG CGACATCCGC CAGGCCTTCG TCTTCTCCAA CAGCAAGCTG
GGCTGTGCGC GCCTGACGCG CGCCCTGGAG CGTGATGGCC TGCGCGCAAC GGCGCTGCAC
GGCGACAAGA GCCAGGACGA GCGCCTGAAG GCGCTTGAAG CCTTCAAGCG CGGCGAGGTG
GATCTGCTGG TGTGTACCGA TGTCGCGGCC CGTGGCCTGG ACATCAAGGA CGTGCCGGCC
GTCTTCAACT ACGACGTGCC CTTCAACGCC GAAGACTATG TGCACCGCAT CGGCCGCACG
GGCCGTGCAG GCGCCTCCGG CATTGCCGTG ACCCTGGTGA CCAACCACGA TGCGCGCCTG
GTGGGCGAGA TCGAGAAGCT CATCAAGAAG AAGATCAACG TTGAGCCCTG CCCCATGGAA
GATTTCCGTG GCAGCGCACC GCGTGGTCAC CGTTTTGACG AGCTGCCGCG CCAAAGCAGC
GGCGGCTACG GTCGTGAACG GGATCGCGGC GCCGAGCGTG GCGATCGCGG CGGTGATGCG
TCGCGGGGCA GTTCCGGTTT TGGCCATCGC GGCTCGCGCA TGACCCAGCG CCCGGCGCAC
TCGGACCCGT TCTTCGACAA GCCCTACGAG GCATCCGCCA GCGTCGATGC GAGCTGGGAC
AGCCAGGGTG CTGCCGCGCC CAAGGCGGGC AGCGGCATCA AGCCCAAGCG CAAGCTGGCC
GCGCTGTTCA AGGCGCCTGT TGCACCTGTC GCGCCGGTCC CGCCTGTGGC ACCCGTCGCC
ACTTCCGAGG TCTGA
|
|---|
| Protein sequence | MTSSFSNLQL AESLARAVAD MGYESMTPIQ AQAIPVVLTG KDVMGAAQTG TGKTAAFSLP
LLQRLMRHEN TSASPARHPV RALVLLPTRE LADQVAQQIA QYAKYTKLRS TVVFGGMDMK
PQTLELKKGV EVLVATPGRL LDHIEAKNAV LNQVEYVVLD EADRMLDIGF LPDLQRILSH
LPKTRTTLLF SATFSPEIKR LASSYLQDPV TIEVARPNET ASTVEQRFYS VSDDDKRYAL
RSLLKQRDIR QAFVFSNSKL GCARLTRALE RDGLRATALH GDKSQDERLK ALEAFKRGEV
DLLVCTDVAA RGLDIKDVPA VFNYDVPFNA EDYVHRIGRT GRAGASGIAV TLVTNHDARL
VGEIEKLIKK KINVEPCPME DFRGSAPRGH RFDELPRQSS GGYGRERDRG AERGDRGGDA
SRGSSGFGHR GSRMTQRPAH SDPFFDKPYE ASASVDASWD SQGAAAPKAG SGIKPKRKLA
ALFKAPVAPV APVPPVAPVA TSEV
|
|---|
| |