| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2131 |
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| Symbol | |
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| ID | 5747693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 2337998 |
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| End bp | 2340280 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641297214 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001563156 |
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| Protein GI | 160897574 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.24997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.523134 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTGG ACGCCCGCCG ATCTCCCTTT TTCCAGGCAC TGCTGGCATC CCAGGATGCT
CCGCAGCTGC CGGATTCACC CTCGCGGCCG CGCGCGGCCA CAGGCTGGGG CGCCATGCGC
TGCACGGTGC TGGCGCTGGC CGCTGCAGCC GTGCTGCTGG CGGGCCTTGG CAGTGCCTGG
TGGGTCTCGC ACAACATGCG CCAGCAGACG CTGGAGCGCG CCATGGCCCG GCAGGCCGAC
GAGGTCGATA CCGTGGCGCG CATGCTGGCC GCGCGGCTGG AGCAGCAGCA GCGCCTGCTG
TGGGTGCTGG CCCAGGGCAT TGCAGACCAG GGCAGCGACC CGAGCCGGCT GATGGGCGAG
ATGCTGCGTG GAGACGCATC CGTGCGGCTG TTCGACACCC TGCAACTGGC CGACGCGCGT
GGCCAGCTGC AGCTCAGCCT GCGCGGCGGC CGTTCCGAGC CCCTGGCCGA TCTGGACGAA
GGCGTGCGCG ACGTGATGCG GCGCAGCCTG GCCGATGGCC GGCCCGTGGT CTCCACCATG
GTGCGCAAGG GGGCCGATCC CGGAATGATG GAGTTGCTGT ACGCCGTGCC GCTGCGTACC
GGCAACGGCA CGGTCAGCGG CGTGCTGTCG GCCGGCGTGC GCATGTCCGC CCAGGCACTG
CTGCCGCCCA GCATCGATCC CTCGCGCTCC GGCGGGCGCC TGCTGGTCAT GCAGCGCGAC
GGGCAGATCC TGGCCCACTC CGACCCCTCG CGCTGGTCGG CGCGCGCCGA GGCCGAGCCC
GGCCTGGGCG CGGACTGGCT GCAGGACCCC GCGGCCGGCG CAGTGCAGGT GGGCCCCGAC
ACCCAGCGGC GCGCGGGCTA CCTGGTGACG ACGGCAGGCA TGCCGCTGCC GCAGTGGCTG
GTGGTCAGGA TCACCCCCGA GGAAGCCATC GCACCCAGCC TGGCGCCGCG CGTGCTGTGG
TGGCTGCTGG CCGCCGTGGC CGGTGTCGCT GGCCTGCTGG TCCTGCTGCT GATCCTGGTC
ACCGAACCCA TGGCGGCCCT GCACCGCACT GCACGCCAAT GGCTGGCGAG CCAGGGAAGG
CTGATGGCCG AGGAGCCCGA TCCCGCGCCC GAACCCGAGC CGGGACATGC CGAGGAAGGC
GGCTGGCGCA TGCCCTGGAC CCATGCCTGG GGCGAGGCCT CCACGCTGTG GCAGGCCCTG
CATCGCCTGG GGCAGATGGG CCAGGAGCAG GCGCATGAGA TTGGCCGGCT GCAACTGCAG
CTGCAGACGC TGATGGACTA CGCGCCCGTG GGCCTGGTGG TCACGCGGTC GGCGCATCTG
GAGCTGGTGG GCCTGCAGGC CGCACGCATG CTCGGCTACC CGCCGCGCGA GCTGCAGGGG
CAGGCGATAC GCCAGCTGTG CGCCTCCGAC ACGGCGCACA TCCAATTGCT GGAGCGCGTG
CGCAAGGACC TGGACATGTA CGGCCAGTTC GACAGCGAGC AGTGCTTTGT CCGCAAGGAC
GGCCGCCCCA TCTGGGTGCG CCTGCACGGC CAGAGCCTGC AGCGCCTGCA GCGCGGCCTG
GAGCCGCGCG CCGTGGTGCC GGCAGACCCC ACCCTGGTCT GGGTGGTCGA GGACGTGACC
ATGCAGCGAC TGGTGCGCGA GCAGCCGGGC TGGAAGGCCA TGCACGATCC GCTGACCCTG
CTGCCCAACC GCGAGGCCTT TGCCATGCGC CTGCATGAGT GGCTGCAGGA ATGCAGTGCC
GCCCAGCGCC TGCCGGCCGA GGCGCTGCAG CAGGGTGAAT CCGCCCTGCA GCACAGCGAC
AACACCGCCG TCGCCACGGT CGAGGAGGCA CAAGAGGCGG AGGAAGAGGC GGAGGAGAAG
ACCGTCGGCC TGCAGCAGCA TGGCGTGATC CTGTTCCTGG ACCTGGACCA TTTCGCCCAC
GTCAACCAGC AGGGCGGCCA TGCGGCGGGC GACGAGGTGC TGTGCCACAT GGCCCGGCTG
ATCGACAGCG TGGTCCGGCC GCTGGGCTGG GTGGCGCGCC TGGGCGGTGA TGAATTCGCC
GTGCTGCTGG CGGGCACCTC GGCGGAGCAG GGCATGCTGC TGGCGCAAAG CCTGTGCATG
GCCGTGCAGG ACTGGGAGGG CGCCCACGAG GGGCAGCGCT ACCTGATGGG TGTCAGCGTC
GGCATGGTGG TGCTCGATGC CCGCCAGCAC ACGGTCAGCA GCGCGCTGCG CTCGGCCGAC
ATGGCCTGCT ATGCGGCCAA GCGCAAGGGC CGCAACCGCG TCGAGGTGCT GGAGGCGGCA
TAG
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| Protein sequence | MSLDARRSPF FQALLASQDA PQLPDSPSRP RAATGWGAMR CTVLALAAAA VLLAGLGSAW
WVSHNMRQQT LERAMARQAD EVDTVARMLA ARLEQQQRLL WVLAQGIADQ GSDPSRLMGE
MLRGDASVRL FDTLQLADAR GQLQLSLRGG RSEPLADLDE GVRDVMRRSL ADGRPVVSTM
VRKGADPGMM ELLYAVPLRT GNGTVSGVLS AGVRMSAQAL LPPSIDPSRS GGRLLVMQRD
GQILAHSDPS RWSARAEAEP GLGADWLQDP AAGAVQVGPD TQRRAGYLVT TAGMPLPQWL
VVRITPEEAI APSLAPRVLW WLLAAVAGVA GLLVLLLILV TEPMAALHRT ARQWLASQGR
LMAEEPDPAP EPEPGHAEEG GWRMPWTHAW GEASTLWQAL HRLGQMGQEQ AHEIGRLQLQ
LQTLMDYAPV GLVVTRSAHL ELVGLQAARM LGYPPRELQG QAIRQLCASD TAHIQLLERV
RKDLDMYGQF DSEQCFVRKD GRPIWVRLHG QSLQRLQRGL EPRAVVPADP TLVWVVEDVT
MQRLVREQPG WKAMHDPLTL LPNREAFAMR LHEWLQECSA AQRLPAEALQ QGESALQHSD
NTAVATVEEA QEAEEEAEEK TVGLQQHGVI LFLDLDHFAH VNQQGGHAAG DEVLCHMARL
IDSVVRPLGW VARLGGDEFA VLLAGTSAEQ GMLLAQSLCM AVQDWEGAHE GQRYLMGVSV
GMVVLDARQH TVSSALRSAD MACYAAKRKG RNRVEVLEAA
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