| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2129 |
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| Symbol | |
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| ID | 5747691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2335218 |
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| End bp | 2337101 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641297212 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001563154 |
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| Protein GI | 160897572 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.590205 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATC CCCAGATGCT CGCCAGCCTG CCCGCTGCCG CGGCCGTGCT ATCCGCCGCC
GTGCGGTCAG GCGCAGGCCC CGTGGCGCAG CTCATGCGCG CGGGCGGCCT GTACTGCGTC
TTCCAGCCGC TGGCCGACTT GCGCAGCGGC AGCATCTATG CGCATGAGGC GCTGATCCGC
GGCCCCCGGG GCATGCCATT GCATACGCCC GATGCCCTGC TCAAGGGCGC TGCGGCCGAG
GGCATTCTTC GGGAATTCGA GCTGCTGGCG GTCTGCGTGG CGCTGCAGGA CTGGGGCCGG
CAGAGTGCGC CGGGCCGGCT GTTCATCAAC CTCAGCGCCC AGGCGCTGGT GCAGGCCGTG
GGGGTCTGCG GCCCCGGCAT GGTCGGGGAC ACGGTGCGCA TCTTCGGCGT GCAGGCCCGC
TCCCTGGTGG TGGAGATCAC CGAGCACGAC CATGTGACCG ACATGCCCGC CGTCTGCGCC
GCCGTGAAGG CCGTGCATGC CACGGGCGCG CGCCTGGCGC TGGATGACTT TGGCGACGGC
CGCTCCAGCC TGCGCCTGTG GTCCGAGGCC AAGCCCGACT TCGTCAAGAT CGACAAATAC
TTCATCCACC AGATCGAGCA GCGCCCGGCC ACGCTGCAGC TGCTGCAGGC CATCAAGGGC
ATTGCCGAGG TCTTCGGCAC CACGCTGATC GCCGAAGGCA TAGAGACCGA GGATGAGCTG
CGCACCCTGC GCGACCTGGG CATTCCGTAT GGCCAGGGCT GGCTGCTGGG CCGCCCTGCC
GAAACCGCCC AGCCCCAGAT CAGCACGCAG GCGCGCAGCG TGGCGCAGGA CCCGCGCGTG
GCCGTGCTGC CCCACCAGGG ACACAGCGCG CGCCCGGGGG TGCTGCGCAA TCTGATGGTG
ATGCAGGCGC CCTGCGTGGT GCCCGCAGCC AGCAACGACG AGGTGGCCGA GCTGTTCCAG
GCCGGCCAGC AGTTGCATGC CATTGCCGTC GTGGAGGCCG GCCGGCCGCT GGCGCTCATC
AACCGCCAGC AGTTCATGAA CCACTACGCC ACGCTGTACT TCCGCGAAGT GCACGGGCGC
AAGCCCTGCC TGGCCTTTGC CAACGTGCAG CCGCGCATCG TGGAGCTCGA TTGCGATGTG
GACCAGCTCG TGGGCATCCT GACCTCGCAG GACCAGCGCT ACCTGAGCGA CGGCTTCATC
GTCACCGACA ACGGCCGCTA TGTGGGCCTG GGCACGGGCG AGCAGCTGGT GCGCCGCGTG
ACCGAGGCCC GCATCGAGGC CGCGCGCCAC GCCAACCCGC TGACCTTCCT GCCCGGCAAC
ATCCCCATCA GCCTGCACAT GCAGCGACTG CTGGACAGCG GCGCCGGCTT CGTGGCCTGC
TACGCCGACC TCAACCACTT CAAGCCCTTC AACGACCACT ACGGCTACTG GCGCGGCGAC
CAGATGATCC GCCTGGTGGC GCGGCTGGCC GTCGCGCACT GCGATGCGCG GCGCGACTTC
GTGGGCCATG TGGGCGGGGA CGACTTCATG CTGCTGCTGC AAAGCGAGGA CTGGCAGCGG
CGCTGCGAAG GCATTGTGGG CGCCTTCGCC AGCGAGGCGC GCCAGCTGTT CGACGACCAG
GCGCGCGAGG CCGGAGGCAT CTGGGCCGAG GACCGCCACG GCATCCGGCG ATTCTTTGCC
TGCACTACGC TGTCCATCGG CGTGGTGCGC GTCACGCCGG GCAGCATGCT GGCACCCGAG
GACATCGCCA ACCTCGCGGC CCTGGCCAAG CAGCAGGCCA AGGCGCAAAG CCTGCCGGGG
CGCGGCGCCA TCGCGCTGCA CACGCCGCAC GATGAAGCGC GGCGCCCGGC ACTGCATGGC
ACCGCAGCGG CCTGGCCTGC CTGA
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| Protein sequence | MIDPQMLASL PAAAAVLSAA VRSGAGPVAQ LMRAGGLYCV FQPLADLRSG SIYAHEALIR
GPRGMPLHTP DALLKGAAAE GILREFELLA VCVALQDWGR QSAPGRLFIN LSAQALVQAV
GVCGPGMVGD TVRIFGVQAR SLVVEITEHD HVTDMPAVCA AVKAVHATGA RLALDDFGDG
RSSLRLWSEA KPDFVKIDKY FIHQIEQRPA TLQLLQAIKG IAEVFGTTLI AEGIETEDEL
RTLRDLGIPY GQGWLLGRPA ETAQPQISTQ ARSVAQDPRV AVLPHQGHSA RPGVLRNLMV
MQAPCVVPAA SNDEVAELFQ AGQQLHAIAV VEAGRPLALI NRQQFMNHYA TLYFREVHGR
KPCLAFANVQ PRIVELDCDV DQLVGILTSQ DQRYLSDGFI VTDNGRYVGL GTGEQLVRRV
TEARIEAARH ANPLTFLPGN IPISLHMQRL LDSGAGFVAC YADLNHFKPF NDHYGYWRGD
QMIRLVARLA VAHCDARRDF VGHVGGDDFM LLLQSEDWQR RCEGIVGAFA SEARQLFDDQ
AREAGGIWAE DRHGIRRFFA CTTLSIGVVR VTPGSMLAPE DIANLAALAK QQAKAQSLPG
RGAIALHTPH DEARRPALHG TAAAWPA
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