Gene Daci_2106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2106 
Symbol 
ID5747668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2308601 
End bp2310898 
Gene Length2298 bp 
Protein Length765 aa 
Translation table11 
GC content68% 
IMG OID641297189 
Productmalic enzyme 
Protein accessionYP_001563131 
Protein GI160897549 
COG category[C] Energy production and conversion 
COG ID[COG0280] Phosphotransacetylase
[COG0281] Malic enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.12577 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.161239 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAAA ACCTGTCCAA CGCTGAACAA GCCCTGCGCG ACGCAGCCCG CGAATACCAT 
CGCAGCCCCA ACAAGGGCAA GATCTCCGTC ACGCCCACCA AGCCCTTGTC CAACCAGCGC
GACCTGTCGC TGGCCTATTC GCCCGGCGTG GCCTACCCCT GCCTGGACAT CCAGGCCGAC
CCCTCGCTGG CCGCCGAATA CACGGCGCGC GGCAACCTGG TCGGCGTCAT CACCAACGGC
ACGGCCGTGC TGGGCCTGGG TGACATCGGC CCGCTGGCCG GCAAGCCGGT GATGGAAGGC
AAGGGCTGCC TGTTCAAGAA GTTCGCTGGC GTCGACGTGT TCGACATCGA ACTGGCCGAG
CGCGATCCGG ACAAGCTGAT CGAGATCATC GCCTCGCTCG AACCCACGCT GGGCGGCATC
AACCTCGAGG ACATCAAGGC GCCCGAGTGC TTCTACATCG AGCAAGAGCT GTCCAAGCGC
ATGAACATCC CCGTGTTCCA TGACGACCAG CACGGCACGG CCATCATCTC CAGCGCCGCC
CTGCTCAACG GGCTGGAGCT GGTGGACAAG CAGATCGGCA ACGTCAAGAT CGCCGTCTCC
GGCGCCGGCG CCGCTGCCAT CGCCTGCGTG AACGTGATGG TGGGCCTGGG CGTCAAGCGC
GAAAACGTCT TCATGTGCGA CTCCAAGGGC GTGATCTACG AAGGCCGCCC CGGTGGCCTG
GACGCCTCCA AGGCCCAGTA CGCGCAAAAG ACGGACGCCC GCACCCTGGC CGATGCCGTC
AAGGACGCCG ACGTCTTCCT GGGCTGCTCG GCTCCCGGCG TGCTCACTGC CGACATGGTC
AAGACCATGG CCGACAAGCC CATCATCCTG GCCCTGGCCA ACCCCGAACC CGAGATCCGC
CCCGAGCTGG CCAAGGCCGT GCGCCCGGAC TGCATCATGG CCACGGGCCG TTCGGACTAC
CCCAACCAGG TCAACAACGT CCTGTGCTTC CCCTACATCT TCCGTGGCGC GCTGGACTGC
GGCGCCACCA AGATCACCGA AGCCATGAAG CTGGCCTGCG TGCGCGAAAT CGCCGCACTG
GCCAAGCAGG ACGTCAGCGA TGAAGTCGCC GCTGCCTACC AGGGCAAGGA GCTGAAGTTC
GGCCCCGACT ACCTGATCCC CACGCCCTTC GACACCCGCC TGATCCTGCG CATCGCGCCG
GCCGTGGCCA AGGCTGCCGA AGAGTCCGGC GTCGCCACCC GCCCCATCGC CGACTACGAC
GCCTACCGCG AGAGCCTGAC CCGCTTCGTC TACCAGACCA GCATGTTCAT GCGTCCGGTG
TTCGCCGCTG CCAAGGCCAA CCAGCAGCGC GTGGCCTATG CCGAAGGCGA AGACGAGCGC
GTGCTGCGCG CCGCCCAGGT CGCCGTCGAT GACGGCCTGG CCAAGCCCAT CCTGATCGGC
CGCCCCGCCG TGATCGAGGC CCGAATCGCC AAGGCCGGCC TGCGCCTGGT GCTGGGCAAG
GACGTGGAGA TCTGCAACCC CGAGGACGAT CCGCGCTTCC GCCAGTACTG GGAAACCTAC
CACCGCCTGA TGGGCCGCAA CGGCGTCACG CCCGAGACGG CCAAGGCCGC CGTGCGCCGC
TCCAACACGC TGATCGCCGC GCTCATGGTC CACCTGGGCG ATGCCGACGC CATGCTCTGC
GGCCTGGTCG GCAAGTTCGA CAGCCACCTG GCCCATGTGC GCGACGTGCT CGGCCTCAAG
CAAGGCGCCG GCGAGTTCGC CACCGTCAAC GCCGTGATGC TGGACAGCGG CACGCTGTTC
ATCGCCGACA CCTACATCAA CGAGGCGCCC AACGCCACCG AGCTGGCCGA CATCGCCCGC
CTGGCGGCCG AGGAAGTGGC CCGCTTCGGC CTGCCGCCCA AGGTGGCCTT CCTGTCGCAC
AGCAACTACG GCTCGTCCAG CCGCCCCTCG GCGCTGAAGA TGCGCGCCGC GCGCGACCTG
TTCGCCGCCG CCAACCCCGA CGTGGAATGC GACGGCGAAA TGCACGGCGA CTCCGCCCTG
TCCGAAGCCA TCCGCGACCG CGCCCTGCTC GAGTCCTCGC TGCACGGCGA GGCCAACGTG
CTGATCTGCC CCAACCTGGA CGCCGCGAAC ATCCTGTTCA ACGTGCTCAA GACCACGGGC
GGCCACGGCA CGACCATCGG CCCCATCCTG CTGGGCGGCG CTGCCGCAGC CCATGTGCTG
ACCCCCTCCG CCACCGTGCG CCGCGTGGTC AACATGACGG CCCTGGCCGC AGCCCAGGCC
ATCGCTGCCC GCGGCTGA
 
Protein sequence
MTQNLSNAEQ ALRDAAREYH RSPNKGKISV TPTKPLSNQR DLSLAYSPGV AYPCLDIQAD 
PSLAAEYTAR GNLVGVITNG TAVLGLGDIG PLAGKPVMEG KGCLFKKFAG VDVFDIELAE
RDPDKLIEII ASLEPTLGGI NLEDIKAPEC FYIEQELSKR MNIPVFHDDQ HGTAIISSAA
LLNGLELVDK QIGNVKIAVS GAGAAAIACV NVMVGLGVKR ENVFMCDSKG VIYEGRPGGL
DASKAQYAQK TDARTLADAV KDADVFLGCS APGVLTADMV KTMADKPIIL ALANPEPEIR
PELAKAVRPD CIMATGRSDY PNQVNNVLCF PYIFRGALDC GATKITEAMK LACVREIAAL
AKQDVSDEVA AAYQGKELKF GPDYLIPTPF DTRLILRIAP AVAKAAEESG VATRPIADYD
AYRESLTRFV YQTSMFMRPV FAAAKANQQR VAYAEGEDER VLRAAQVAVD DGLAKPILIG
RPAVIEARIA KAGLRLVLGK DVEICNPEDD PRFRQYWETY HRLMGRNGVT PETAKAAVRR
SNTLIAALMV HLGDADAMLC GLVGKFDSHL AHVRDVLGLK QGAGEFATVN AVMLDSGTLF
IADTYINEAP NATELADIAR LAAEEVARFG LPPKVAFLSH SNYGSSSRPS ALKMRAARDL
FAAANPDVEC DGEMHGDSAL SEAIRDRALL ESSLHGEANV LICPNLDAAN ILFNVLKTTG
GHGTTIGPIL LGGAAAAHVL TPSATVRRVV NMTALAAAQA IAARG