| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1999 |
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| Symbol | |
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| ID | 5747558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 2183734 |
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| End bp | 2185572 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641297079 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001563024 |
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| Protein GI | 160897442 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGGC TTCTTTCCGA CAAGGTGCTC CTGCGCCTGG TGCTCGGCAA CCTGCTGGTG
GCCGGCCTGC TGGGCCTGGC CACCTGGCTG AGCCTGCGCG CCAACCACCA GGCCGACCTG
GACCTGGGCG TGGCCGTCAC CCGGAACCAG GCCCGCAGCC TGAGCCTGGA GCTGAACGCC
GAGATGCGGC TGGTGGACAA CGCCCTGGCC ACCGTCGCGG GCCGCTACCG CAGCCGGAGT
CTGGAAGGCG CGGACGTGGC GGCGCTGGCC CTCTATGAAA TCCTGCAGGA GCAGCGCGCC
CTCGTTCCCT TCGTCACGGC GCTGCGCGTC ACCGACGCCA ATGGCCAGGT CCTGCAGAGT
GCGAACGAGG AGGAGCCGGC ATTCTCCGTG GCCGAGCGAG GCTACTTCGA CCGGGCGCGC
AACACCGACC GCATGGTGGT CTCCGATCCG CTGGTCAGTC ACTCCTTCAA GAAATGGGCC
ATCGTGCTGG CGCGGCGGCT GCAATCCGGC GATGGGGATT TCCAGGGCAT CGTCTACGCG
GTCGTCGCGG CCGAGCATTT CCAGTCGCTG TTCCGCCGCC AGGCCTTCGG GCCCGACAGC
GCCATTGCGC TGCGTTCGGA CAAGGATCTG CTGGTGGCCC GCTACGCGGC AGGCGATCCC
CAGCCCATGG CCGGCATCGG CGGCTCGGAA GTCTCGGGCG AGTACCACCG GGCCCTGGCC
GATGACCGGG AGCTTGGCTG GTACATCACG CCCACGCTGC TCGATGGCGT GGAGCGCATC
ACGGCCTACC AGCGCCTGGC CGGCTATCCG CTGACCGTCT TCACCGGCCT GGGCACGGAA
AGCTACCTGG CGGGGTGGCG CGCATCGGCC TGGCGTGCCT GGGCGCTCAC GGGCCTGAGC
ATCGCGCTGA TCGCGCTGGG CTCGGTCAGC CTCTATCTGC TGCAGCAGCG CGAACGCGTG
GCGCGCATCC GGCTCGCCGA GCTGCTGCGC CAGCAGGAAC TGTTCATGGA CAACGACCTC
ATCGGCATCG CCCGCCTGCG CGAGCGCCGG CTGCTGTGGA CCAACCAGGC CCTGCAACGC
ATGCTCAAGC GCCCGGCTGG CGAGCTGCTG GACCACTCGG CGCGCATCCT CTACCCGGAC
GAGGAAACCT ACGAACGCTC CGGCGAACTG GCCTATGGCG CACTGCGCTC CAGCGGCAAA
TGCCACGCCC AGATGCAGCT GCAGACCAGC GATGGCAGCC TGCTCTGGGT CGATGTCAGC
GGCGCGGGCC TGGCCGATGG CGAATCGATA TGGGTCTTCG TGGACATCGA CGCCCTCAAG
CGCGGCGAGC AGGCGGCCCA GCACCAGGCA ATGCACGACG TGCTGACCGG CCTGGCCAAC
CGCCGCGCGC TGCAGGCGCG GCTGCAGCGC GCGCTGGCCC AGGCCAGCGG CCCCGGCCAG
TTGGCCGTCT GCTTCATGGA CCTGGACGGC TTCAAGCAAG TCAACGACAC CGAAGGCCAC
GACGCCGGCG ATGAAGTGCT GCGCATCATC GCCCGCCGCC TCACCACCCA GGCCCGCGAA
ACCGACTGCG TCGCCCGCCT GGGCGGAGAC GAATTCGTGC TGCTGCTGGA CGAACTGGCC
TCGGCCGACG ACGCCCTGCA GATCATGCAG CGCTGCCTGG CCTCCATCCG CCAGCCCATC
CGCCTGCACA GCGGCGCCAC CGTGCAGGTC GGCGCCAGCA TGGGCATCGC CCTCAATGCC
TCCCGGGAAG ATGCCACCCA GCTCCTGCAG CGCGCCGACG AGGCCATGTA CGCGGCCAAG
CGCGCGGGCA AGGGGCGGAT AGTGGTGGCG GGCGGGTAG
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| Protein sequence | MKRLLSDKVL LRLVLGNLLV AGLLGLATWL SLRANHQADL DLGVAVTRNQ ARSLSLELNA
EMRLVDNALA TVAGRYRSRS LEGADVAALA LYEILQEQRA LVPFVTALRV TDANGQVLQS
ANEEEPAFSV AERGYFDRAR NTDRMVVSDP LVSHSFKKWA IVLARRLQSG DGDFQGIVYA
VVAAEHFQSL FRRQAFGPDS AIALRSDKDL LVARYAAGDP QPMAGIGGSE VSGEYHRALA
DDRELGWYIT PTLLDGVERI TAYQRLAGYP LTVFTGLGTE SYLAGWRASA WRAWALTGLS
IALIALGSVS LYLLQQRERV ARIRLAELLR QQELFMDNDL IGIARLRERR LLWTNQALQR
MLKRPAGELL DHSARILYPD EETYERSGEL AYGALRSSGK CHAQMQLQTS DGSLLWVDVS
GAGLADGESI WVFVDIDALK RGEQAAQHQA MHDVLTGLAN RRALQARLQR ALAQASGPGQ
LAVCFMDLDG FKQVNDTEGH DAGDEVLRII ARRLTTQARE TDCVARLGGD EFVLLLDELA
SADDALQIMQ RCLASIRQPI RLHSGATVQV GASMGIALNA SREDATQLLQ RADEAMYAAK
RAGKGRIVVA GG
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