Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1906 |
Symbol | ispH |
ID | 5747463 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 2107565 |
End bp | 2108563 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641296984 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_001562931 |
Protein GI | 160897349 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.688735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0000396961 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCTGGATT CGACCTCGCC CCAGGAAATC CTGCTGGCCG AGCCCCGGGG CTTCTGTGCC GGCGTGGACC GCGCCATCGA GATCGTGGAG CGTGCGCTGG CCAAGTTCGG CGCGCCCATC TACGTGCGCC ACGAGATCGT GCACAACACC TTCGTGGTCA ACGATCTCAA GGCCAAGGGA GCGATCTTCA TCGAGGAGCT GGACGACGTG CCGCCCGGCT CCACCCTGGT GTTCAGCGCC CACGGCGTGA GCCGGGCGGT GCAGGAAGAG GCGCGGCGGC GCGGTTTCTC CATCTTCGAC GCCACCTGCC CGCTGGTGAC CAAGGTGCAT GTGGAAGTGG CCAAGCTCGC CAAGGAAGGC TACGAGTTCC TGATGATCGG CCACAAGGGG CATCCCGAGG TCGAGGGCAC CATGGGCCAG CTGTCCGAGG GCATCCACCT GGTCGAGGAC GAGGCCGATG TGGCCCGTGT CACCCCCCGC CAGACCGAGA AGCTGGCCGT GGTCACGCAG ACCACGCTGT CGGTGGACGA TGCCGCCGGC ATCACGGCGG CCATCCGCGC GCGCTTTCCG CAGGTGCGCG AGCCCAAGCA GCAGGACATC TGCTATGCCA CGCAAAACCG CCAGGACGCC GTCAAGGTGC TGGCGCCGCA GGTGGATGTG CTCATCGTGG TGGGCAGTCC CACCAGTTCC AACAGCAACC GGCTGCGCGA GCTGGCCGCG CGCCTGGGAA CGCCCGCCTA CATGGTGGAC AACGCGGGCG AGCTGTGCGA GGAATGGTTT GCCAATGCCG GGCGCGTGGG CCTGACGGCC GGGGCCTCCG CACCCGAAGT GCTGGTGGAC GAGGTCATCC AGCGCCTGCG CCAGCTGGGC GCGCTGTCGG TGCGCAAGAT GGATGGCATC GAGGAGACCG TGAAGTTCCC GCTGCCCAAG GGCCTGAAGA TCGACGCGGC CACGGGCCTG GAGATCTCCG TGGGCAAGCA GCCCGAGACG GGCGGCTGA
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Protein sequence | MLDSTSPQEI LLAEPRGFCA GVDRAIEIVE RALAKFGAPI YVRHEIVHNT FVVNDLKAKG AIFIEELDDV PPGSTLVFSA HGVSRAVQEE ARRRGFSIFD ATCPLVTKVH VEVAKLAKEG YEFLMIGHKG HPEVEGTMGQ LSEGIHLVED EADVARVTPR QTEKLAVVTQ TTLSVDDAAG ITAAIRARFP QVREPKQQDI CYATQNRQDA VKVLAPQVDV LIVVGSPTSS NSNRLRELAA RLGTPAYMVD NAGELCEEWF ANAGRVGLTA GASAPEVLVD EVIQRLRQLG ALSVRKMDGI EETVKFPLPK GLKIDAATGL EISVGKQPET GG
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